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[174262_at]

Description C51924_rc /REP_DB=TREMBL Accession /GB=C51924 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 28      4grp_high_8_8 > 53      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 380.6
(-0.1)
P 		491.3
(3)
P 		468.2
(2.4)
P 		274.2
(-3)
A 		217
B 534.4
(0.3)
P 		629.7
(1.5)
P 		743
(3)
P 		282.1
(-3)
P 		461
C 331.8
(-2.9)
P 		546.6
(3)
P 		480.1
(1.2)
P 		329.5
(-3)
P 		217
avr 415.6
(-0.3) 		555.9
(2.8) 		563.8
(3) 		295.3
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 780.9
(3)
P 		413.5
(-1.4)
P 		437.3
(-1.1)
P 		281
(-3)
P 		382.9
(-1.8)
P 		424.9
(-1.3)
P 		500
B 634.7
(3)
P 		398
(-2.5)
P 		378.3
(-3)
P 		542.5
(0.8)
P 		424
(-1.9)
P 		479.4
(-0.6)
P 		256
C 405.7
(-0.2)
P 		494
(3)
P 		330.6
(-3)
P 		450.9
(1.4)
P 		449.6
(1.4)
P 		457.8
(1.7)
P 		163
avr 607.1
(3) 		435.2
(-1.6) 		382.1
(-3) 		424.8
(-1.9) 		418.8
(-2) 		454
(-1.1) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 138.6
(3)
P 		106.6
(1.1)
P 		122.4
(2)
P 		40.1
(-3)
A 		99
B 170.4
(2.9)
P 		155.5
(2.1)
P 		172.2
(3)
P 		60.1
(-3)
P 		112
C 109.8
(-0.1)
P 		157.2
(2.5)
P 		167.3
(3)
P 		55.6
(-3)
P 		112
avr 139.6
(2.2) 		139.8
(2.2) 		154
(3) 		51.9
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 144
(2.8)
P 		147.1
(3)
P 		95.2
(-1.1)
P 		71.3
(-3)
P 		115.5
(0.5)
P 		103.4
(-0.5)
P 		76
B 220.8
(3)
P 		132.5
(-1.1)
P 		91.9
(-3)
P 		143.7
(-0.6)
P 		172.3
(0.7)
P 		178.8
(1)
P 		129
C 150.4
(2.8)
P 		150.7
(2.8)
P 		84.1
(-3)
P 		90.7
(-2.4)
P 		145.5
(2.3)
P 		153.2
(3)
P 		69
avr 171.7
(3) 		143.4
(0.9) 		90.4
(-3) 		101.9
(-2.2) 		144.4
(1) 		145.1
(1) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21717
Sequence Type Exemplar sequence
Representative Public ID C51924 NCBI
Target Description C51924_rc /REP_DB=TREMBL Accession /GB=C51924 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M03F8.2a ENSEMBL cdna:known chromosome:CEL140:V:5946068:5953984:1 gene:M03F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5953653-5953939(+) 100.0 100.0
Public Domain and Genome References
Ensembl M03F8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741545 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) Transporter family member (pst-1) [Caenorhabditis elegans] gb|AAX55686.1| Paps (adenosine 3'-phosphate 5'-phosphosulfate) transporter protein 1, isoform a [Caenorhabditis elegans] sp|Q8MXJ9|PST1_CAEEL Adenosine 3'-phospho 5'-phosphosulfate transporter 1 (PAPS transporter 1) 0.0
blast NP_741546 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) Transporter family member (pst-1) [Caenorhabditis elegans] gb|AAX55687.1| Paps (adenosine 3'-phosphate 5'-phosphosulfate) transporter protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024060 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) Transporter family member (pst-1) [Caenorhabditis elegans] gb|AAX55688.1| Paps (adenosine 3'-phosphate 5'-phosphosulfate) transporter protein 1, isoform c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
M03F8.2a 7 24-46,102-124,144-166,233-255,265-287,307-329,349-371
Sequence
Target Sequence 
>C. ELEGANS:174262_AT
tccctcctttctgtaatttttcactgattttgccgtcgattttggcattgtagccttcct
catcccccttattcttatcacgtcagcagaagcatctgattcatttcttctatttattgc
atttatcactgtgtgtcatgcacgggttttttcgtttttcatccttgctacattggtcac
ccccctcccctcccaccattcactcccattttgaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCTTTCTGTAATTTTTCACT 28 597 45 Antisense
ATTTTTCACTGATTTTGCCGTCGAT 539 15 60 Antisense
GATTTTGCCGTCGATTTTGGCATTG 330 427 70 Antisense
TTTTGGCATTGTAGCCTTCCTCATC 361 679 84 Antisense
CCTTATTCTTATCACGTCAGCAGAA 135 269 111 Antisense
AAGCATCTGATTCATTTCTTCTATT 353 151 134 Antisense
TTATTGCATTTATCACTGTGTGTCA 20 679 158 Antisense
ATCACTGTGTGTCATGCACGGGTTT 218 29 169 Antisense
GTGTCATGCACGGGTTTTTTCGTTT 573 485 177 Antisense
TTTCATCCTTGCTACATTGGTCACC 393 671 201 Antisense
CCACCATTCACTCCCATTTTGAAAG 77 275 237 Antisense
Sequence Source Affymetrix Proprietary Database