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[174261_at]

Description C35097_rc /REP_DB=TREMBL Accession /GB=C35097 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 76      6grp_total > 92      4grp_total > 49      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 1216.3
(-3)
P 		1253.6
(-2.2)
P 		1513.6
(3)
P 		1383.4
(0.4)
P 		297
B 1421.1
(-3)
P 		2041.7
(3)
P 		1922.6
(1.8)
P 		1503.1
(-2.2)
P 		621
C 1418.5
(-3)
P 		1753.1
(3)
P 		1751.4
(3)
P 		1504
(-1.5)
P 		335
avr 1352
(-3) 		1682.8
(2.3) 		1729.2
(3) 		1463.5
(-1.2) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 1314.8
(3)
P 		1293.6
(2.8)
P 		1118.8
(0.8)
P 		968.6
(-0.9)
P 		1296.2
(2.8)
P 		779.7
(-3)
P 		535
B 1132.2
(2)
P 		1038.3
(1)
P 		650.9
(-3)
P 		1092.5
(1.6)
P 		1231.2
(3)
P 		766.5
(-1.8)
P 		580
C 982.1
(-3)
P 		1019.2
(-1.2)
P 		1105.5
(2.9)
P 		995.8
(-2.3)
P 		1010.5
(-1.6)
P 		1108.3
(3)
P 		126
avr 1143
(2.3) 		1117
(1.7) 		958.4
(-1.5) 		1019
(-0.3) 		1179.3
(3) 		884.8
(-3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 442.8
(3)
P 		272.1
(-1.3)
P 		395.7
(1.8)
P 		202.5
(-3)
P 		240
B 453.2
(1.3)
P 		504.2
(3)
P 		445.5
(1.1)
P 		320.3
(-3)
P 		184
C 469.6
(0.6)
P 		504
(1.2)
P 		610.4
(3)
P 		253.6
(-3)
P 		357
avr 455.2
(2.2) 		426.8
(1.5) 		483.9
(3) 		258.8
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 242.4
(-1.8)
P 		460.1
(3)
P 		243.7
(-1.8)
P 		245.7
(-1.8)
P 		391.1
(1.5)
P 		189.8
(-3)
P 		270
B 393.9
(1.1)
P 		345.6
(0.3)
P 		158.1
(-3)
P 		289.4
(-0.7)
P 		500.2
(3)
P 		285.8
(-0.8)
P 		342
C 364
(2.8)
P 		311
(0.9)
P 		281.4
(-0.1)
P 		200.3
(-3)
P 		327
(1.5)
P 		371
(3)
P 		171
avr 333.4
(0.6) 		372.2
(1.9) 		227.7
(-3) 		245.1
(-2.4) 		406.1
(3) 		282.2
(-1.2) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22462
Sequence Type Exemplar sequence
Representative Public ID C35097 NCBI
Target Description C35097_rc /REP_DB=TREMBL Accession /GB=C35097 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076090 NCBI Caenorhabditis elegans Y71H10B.1b (Y71H10B.1) mRNA, complete cds. 11/11 None
Y71H10B.1b ENSEMBL cdna:known chromosome:CEL140:X:2834217:2840285:-1 gene:Y71H10B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180573 3 1 NM_076090 174261_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2834289-2834575(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71H10B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68587 Hypothetical protein Y71H10B.1b [Caenorhabditis elegans] ref|NP_508491.1| Y71H10B.1b [Caenorhabditis elegans] 0.0
blast AAC68740 Hypothetical protein Y71H10B.1a [Caenorhabditis elegans] ref|NP_508492.1| Y71H10B.1a [Caenorhabditis elegans] 0.0
blast CAE58827 Hypothetical protein CBG02038 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec 5NTC_HUMAN (P49902) Cytosolic purine 5-nucleotidase (EC 3.1.3.5) (5-nucleotidase cytosolic II) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008380 EMBL-EBI Purine 5-nucleotidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174261_AT
cgtttttattcaaatcggcctgctttaactcacataatttacccttcttcttcttccctc
atgaattctattcaattcgttgttcaccccccgaccctattattttttccaaccacttca
ttcacgagccttatttttgaacttgttctcttttgaagaccgactccaccgaacgtgtgt
aacatcattattcttcattcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTTTTATTCAAATCGGCCTGCTT 368 247 35 Antisense
ATTCAAATCGGCCTGCTTTAACTCA 570 9 42 Antisense
GGCCTGCTTTAACTCACATAATTTA 510 541 51 Antisense
AACTCACATAATTTACCCTTCTTCT 665 139 61 Antisense
TTCTATTCAATTCGTTGTTCACCCC 383 691 100 Antisense
TTATTTTTTCCAACCACTTCATTCA 75 679 134 Antisense
CACTTCATTCACGAGCCTTATTTTT 377 197 148 Antisense
CGAGCCTTATTTTTGAACTTGTTCT 643 249 159 Antisense
GTTCTCTTTTGAAGACCGACTCCAC 28 443 179 Antisense
CCGACTCCACCGAACGTGTGTAACA 33 263 194 Antisense
GTAACATCATTATTCTTCATTCACT 618 461 213 Antisense
Sequence Source Affymetrix Proprietary Database