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[174260_at]

Description C56625_rc /REP_DB=TREMBL Accession /GB=C56625 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk265a4 : 3prime end, single read.
Cluster 6grp_total > 06      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 81.5
(3)
P 		62
(-0.6)
A 		49.4
(-3)
A 		59.3
(-1.1)
A 		32
B 82.8
(3)
P 		60.8
(0.9)
A 		19.5
(-3)
A 		24.3
(-2.5)
A 		63
C 76.5
(0.6)
P 		104.3
(3)
P 		34.7
(-3)
P 		39.6
(-2.6)
A 		70
avr 80.3
(3) 		75.7
(2.4) 		34.5
(-3) 		41.1
(-2.1) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 86.4
(3)
P 		47.1
(-1.4)
P 		62.2
(0.3)
P 		40.6
(-2.1)
A 		59.3
(-0)
A 		33
(-3)
A 		53
B 40
(0.7)
P 		50.6
(2.8)
P 		46.9
(2.1)
M 		51.5
(3)
A 		39.6
(0.6)
P 		21.2
(-3)
A 		30
C 70.9
(3)
P 		50.5
(0.4)
P 		40.3
(-0.9)
A 		32.1
(-2)
A 		24
(-3)
A 		42.5
(-0.6)
A 		47
avr 65.8
(3) 		49.4
(0.1) 		49.8
(0.1) 		41.4
(-1.4) 		41
(-1.4) 		32.2
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 29.7
(3)
P 		13.5
(-1.6)
A 		12.9
(-1.8)
A 		8.7
(-3)
A 		21
B 26.4
(3)
P 		15
(-0.1)
A 		4.5
(-3)
A 		5.2
(-2.8)
A 		22
C 25.3
(1.8)
P 		30
(3)
P 		12.1
(-1.6)
P 		6.7
(-3)
A 		23
avr 27.1
(3) 		19.5
(0.7) 		9.8
(-2.1) 		6.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.9
(1.8)
P 		16.8
(2.3)
P 		13.6
(0.4)
P 		10.3
(-1.6)
A 		17.9
(3)
A 		8
(-3)
A 		10
B 13.9
(1)
P 		16.8
(3)
P 		11.4
(-0.6)
M 		13.6
(0.8)
A 		16.1
(2.5)
P 		7.9
(-3)
A 		9
C 26.3
(3)
P 		15.4
(-0.3)
P 		10.3
(-1.8)
A 		6.5
(-3)
A 		7.8
(-2.6)
A 		14.2
(-0.7)
A 		20
avr 18.7
(3) 		16.3
(1.3) 		11.8
(-1.8) 		10.1
(-2.9) 		13.9
(-0.3) 		10
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21782
Sequence Type Exemplar sequence
Representative Public ID C56625 NCBI
Target Description C56625_rc /REP_DB=TREMBL Accession /GB=C56625 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk265a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C25E10.3a ENSEMBL cdna:known chromosome:CEL140:V:9039080:9041361:1 gene:C25E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9041072-9041352(+) 100.0 100.0
Public Domain and Genome References
Ensembl C25E10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92309 Serpentine receptor, class sx protein 34, isoform a [Caenorhabditis elegans] ref|NP_505341.1| Serpentine Receptor, class SX family member (srsx-34) [Caenorhabditis elegans] 0.0
blast AAK68203 Serpentine receptor, class sx protein 34, isoform b [Caenorhabditis elegans] ref|NP_505340.1| Serpentine Receptor, class SX family member (srsx-34) [Caenorhabditis elegans] 0.0
blast CAE72080 Hypothetical protein CBG19166 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C25E10.3a 12 33-55,70-92,105-122,132-154,166-188,208-230,280-302,312-331,343-361,390-412,432-451,461-483
Sequence
Target Sequence 
>C. ELEGANS:174260_AT
gatattcattttagctgcactgttctaaccgtataagttaatgattcattcattatagtg
taatattgcaactcatagtgcttttatgaaaacaaaggtctttggggaaattcattgatc
acgtgatacttattgagttttctcctcaatatttcattttagtattcgatctcgctaatt
gagtgagcgtgattgaaacacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCATTTTAGCTGCACTGTTC 112 427 55 Antisense
TTTTAGCTGCACTGTTCTAACCGTA 86 675 63 Antisense
GCTGCACTGTTCTAACCGTATAAGT 359 295 68 Antisense
ACCGTATAAGTTAATGATTCATTCA 633 87 82 Antisense
ATATTGCAACTCATAGTGCTTTTAT 144 19 117 Antisense
AGGTCTTTGGGGAAATTCATTGATC 199 55 150 Antisense
GGAAATTCATTGATCACGTGATACT 214 527 160 Antisense
GTGATACTTATTGAGTTTTCTCCTC 317 485 177 Antisense
ATTTCATTTTAGTATTCGATCTCGC 579 15 205 Antisense
ATTCGATCTCGCTAATTGAGTGAGC 394 7 218 Antisense
GAGTGAGCGTGATTGAAACACGACA 268 401 235 Antisense
Sequence Source Affymetrix Proprietary Database