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[174259_at]

Description C56660_rc /REP_DB=TREMBL Accession /GB=C56660 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk265g6 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 4.6
(-2.5)
A 		2.3
(-3)
A 		3.3
(-2.8)
A 		29.5
(3)
A 		27
B 1.5
(-3)
A 		5.7
(0.5)
A 		5.8
(0.5)
A 		8.8
(3)
A 		7
C 1.8
(-3)
A 		5.8
(-2.5)
A 		3.9
(-2.7)
A 		48.8
(3)
A 		47
avr 2.6
(-3) 		4.6
(-2.5) 		4.3
(-2.6) 		29
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 21.4
(3)
A 		8.1
(-1.3)
A 		3
(-3)
A 		7
(-1.7)
A 		7.3
(-1.6)
A 		4
(-2.7)
A 		18
B 6.8
(1.8)
A 		7.6
(3)
A 		4.8
(-1.3)
A 		6.1
(0.7)
A 		7.6
(3)
A 		3.7
(-3)
A 		4
C 26.7
(3)
A 		9.6
(-1.4)
A 		3.3
(-3)
A 		23.8
(2.3)
A 		4.1
(-2.8)
A 		8.2
(-1.7)
A 		23
avr 18.3
(3) 		8.4
(-1.1) 		3.7
(-3) 		12.3
(0.5) 		6.3
(-1.9) 		5.3
(-2.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-1.1)
A 		0.5
(-3)
A 		0.9
(-2.4)
A 		4.3
(3)
A 		4
B 0.5
(-3)
A 		1.4
(0.9)
A 		1.4
(0.9)
A 		1.9
(3)
A 		1
C 0.6
(-3)
A 		1.7
(-2.1)
A 		1.4
(-2.4)
A 		8.2
(3)
A 		8
avr 0.9
(-3) 		1.2
(-2.5) 		1.2
(-2.5) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.9
(3)
A 		2.9
(1.1)
A 		0.7
(-3)
A 		1.8
(-0.9)
A 		2.2
(-0.2)
A 		1
(-2.4)
A 		3
B 2.4
(0.8)
A 		2.5
(1.1)
A 		1.2
(-3)
A 		1.6
(-1.7)
A 		3.1
(3)
A 		1.4
(-2.4)
A 		2
C 9.9
(3)
A 		2.9
(-1.6)
A 		0.8
(-3)
A 		4.8
(-0.4)
A 		1.3
(-2.7)
A 		2.8
(-1.7)
A 		9
avr 5.4
(3) 		2.8
(-0.5) 		0.9
(-3) 		2.7
(-0.6) 		2.2
(-1.3) 		1.7
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21843
Sequence Type Exemplar sequence
Representative Public ID C56660 NCBI
Target Description C56660_rc /REP_DB=TREMBL Accession /GB=C56660 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk265g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56660
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56660 C56660_rc /REP_DB=TREMBL Accession /GB=C56660 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk265g6 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075068 11/11 Negative Strand Matching Probes A 
SNAP00000002317 11/11 Negative Strand Matching Probes None
GENEFINDER00000002334 11/11 Negative Strand Matching Probes None
F59A1.10 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17662971-17663250(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174259_AT
ttttggtttggatccaactccgcagttttgtgaagtttaacaggaaaatactcggcgaac
cacttgtgcagcgacaaatttctgaaccaattatcccgatatcctcctcttctcggagat
tctcgatcgtaaaggtaccaaactgcgtagagacccaaaataatccactggccggtgaaa
aagagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGTTTGGATCCAACTCCGCAG 333 679 46 Antisense
GGATCCAACTCCGCAGTTTTGTGAA 345 513 55 Antisense
AAATACTCGGCGAACCACTTGTGCA 290 115 91 Antisense
GCGAACCACTTGTGCAGCGACAAAT 248 289 100 Antisense
GCAGCGACAAATTTCTGAACCAATT 646 311 113 Antisense
TGAACCAATTATCCCGATATCCTCC 61 575 128 Antisense
TCCTCTTCTCGGAGATTCTCGATCG 239 593 150 Antisense
GATTCTCGATCGTAAAGGTACCAAA 537 429 163 Antisense
GGTACCAAACTGCGTAGAGACCCAA 345 501 179 Antisense
GACCCAAAATAATCCACTGGCCGGT 589 379 197 Antisense
TCCACTGGCCGGTGAAAAAGAGCAC 277 587 209 Antisense
Sequence Source Affymetrix Proprietary Database