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[174258_at]

Description C35426_rc /REP_DB=TREMBL Accession /GB=C35426 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk432g8 : 3prime end, single read.
Cluster 6grp_total > 37      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 12.6
(-0.6)
A 		21.4
(2)
A 		4.5
(-3)
A 		24.7
(3)
A 		20
B 26.3
(3)
A 		5.2
(-2.2)
A 		2
(-3)
A 		10.6
(-0.9)
A 		24
C 16.9
(-0.3)
A 		18.7
(0.2)
A 		5.6
(-3)
A 		30.5
(3)
A 		25
avr 18.6
(1.9) 		15.1
(0.7) 		4
(-3) 		21.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 43.8
(3)
A 		12.3
(-2)
A 		19.7
(-0.8)
A 		5.7
(-3)
A 		12.4
(-1.9)
A 		20.6
(-0.7)
A 		38
B 14.9
(-1.3)
A 		10
(-2.2)
A 		5.9
(-3)
A 		11.8
(-1.9)
A 		10.7
(-2.1)
A 		36.9
(3)
A 		31
C 25
(0.1)
A 		41.3
(3)
A 		14.1
(-1.8)
A 		7
(-3)
A 		9.9
(-2.5)
A 		9.5
(-2.6)
A 		34
avr 27.9
(3) 		21.2
(1) 		13.2
(-1.5) 		8.2
(-3) 		11
(-2.1) 		22.3
(1.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.6
(3)
A 		4.6
(3)
A 		1.2
(-3)
A 		3.6
(1.2)
A 		3
B 8.4
(3)
A 		1.3
(-2.4)
A 		0.5
(-3)
A 		2.3
(-1.6)
A 		8
C 5.6
(3)
A 		5.4
(2.7)
A 		2
(-3)
A 		5.1
(2.2)
A 		4
avr 6.2
(3) 		3.8
(0.1) 		1.2
(-3) 		3.7
(0) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.1
(3)
A 		4.4
(-0.3)
A 		4.3
(-0.4)
A 		1.4
(-3)
A 		3.7
(-0.9)
A 		5
(0.2)
A 		7
B 5.2
(-1.2)
A 		3.3
(-2.1)
A 		1.4
(-3)
A 		3.1
(-2.2)
A 		4.4
(-1.5)
A 		13.8
(3)
A 		12
C 9.3
(1.2)
A 		12.6
(3)
A 		3.6
(-1.8)
A 		1.4
(-3)
A 		3.2
(-2)
A 		3.2
(-2)
A 		11
avr 7.5
(3) 		6.8
(2.2) 		3.1
(-1.8) 		2
(-3) 		3.8
(-1) 		7.3
(2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20967
Sequence Type Exemplar sequence
Representative Public ID C35426 NCBI
Target Description C35426_rc /REP_DB=TREMBL Accession /GB=C35426 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk432g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065785, NM_065786
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F09F7.5c ENSEMBL cdna:known chromosome:CEL140:III:5547064:5551106:1 gene:F09F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5550815-5551095(+) 100.0 100.0
Public Domain and Genome References
Ensembl F09F7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498188 F09F7.5c [Caenorhabditis elegans] gb|AAL02480.1| Hypothetical protein F09F7.5c [Caenorhabditis elegans] 0.0
blast NP_498186 F09F7.5a [Caenorhabditis elegans] gb|AAA50697.1| Hypothetical protein F09F7.5a [Caenorhabditis elegans] 0.0
blast NP_498187 F09F7.5b [Caenorhabditis elegans] gb|AAL02479.1| Hypothetical protein F09F7.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:174258_AT
tcctacgaggcaggttgcataccctagcagatatttctaaatagattttgtaccaaatat
cattaactggggagccttcagtagttgtcctatttcctggcacttgttaattttcaaaaa
attattcaaattcccactattttcagattaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTACGAGGCAGGTTGCATACCCT 426 591 13 Antisense
AGGCAGGTTGCATACCCTAGCAGAT 508 53 20 Antisense
GGTTGCATACCCTAGCAGATATTTC 565 507 25 Antisense
GCATACCCTAGCAGATATTTCTAAA 5 307 29 Antisense
AAATATCATTAACTGGGGAGCCTTC 502 113 67 Antisense
TGGGGAGCCTTCAGTAGTTGTCCTA 103 553 80 Antisense
GAGCCTTCAGTAGTTGTCCTATTTC 390 385 84 Antisense
CAGTAGTTGTCCTATTTCCTGGCAC 528 207 91 Antisense
ATTTCCTGGCACTTGTTAATTTTCA 607 15 104 Antisense
ATTATTCAAATTCCCACTATTTTCA 384 13 133 Antisense
AATTCCCACTATTTTCAGATTAATG 53 179 141 Antisense
Sequence Source Affymetrix Proprietary Database