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[174257_at]

Description C55314_rc /REP_DB=TREMBL Accession /GB=C55314 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk202a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 29      4grp_high_8_8 > 23      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 0      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1382
1 2 3 4 range
A 1772.4
(2.3)
P 		1076.7
(-3)
P 		1860.4
(3)
P 		1800
(2.5)
P 		784
B 1372.8
(-3)
P 		1611.4
(-1.7)
P 		1507.6
(-2.3)
P 		2459.1
(3)
P 		1086
C 1633.8
(-3)
P 		1640.3
(-2.9)
P 		2054.4
(3)
P 		1706
(-2)
P 		421
avr 1593
(-1.3) 		1442.8
(-3) 		1807.5
(1) 		1988.4
(3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1622
1 2 3 4 5 6 range
A 1932.3
(-0.1)
P 		1836.8
(-0.7)
P 		1451.2
(-3)
P 		1698.4
(-1.5)
P 		2341.9
(2.3)
P 		2457.4
(3)
P 		1006
B 2774.6
(2.7)
P 		2575.9
(2)
P 		1236.2
(-3)
P 		2188.8
(0.5)
P 		1978.7
(-0.2)
P 		2847.6
(3)
P 		1611
C 2398.3
(0.4)
P 		2293.4
(-0.2)
P 		1787.2
(-3)
P 		2240.2
(-0.5)
P 		2386.6
(0.4)
P 		2858.2
(3)
P 		1071
avr 2368.4
(1.3) 		2235.4
(0.6) 		1491.5
(-3) 		2042.5
(-0.3) 		2235.7
(0.6) 		2721.1
(3) 		1230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 482
1 2 3 4 range
A 645.3
(3)
P 		233.7
(-3)
P 		486.4
(0.7)
P 		263.5
(-2.6)
P 		412
B 437.8
(0)
P 		398
(-1.3)
P 		349.4
(-3)
P 		524
(3)
P 		175
C 540.8
(0.5)
P 		471.6
(-0.4)
P 		716
(3)
P 		287.7
(-3)
P 		428
avr 541.3
(3) 		367.8
(-2.7) 		517.3
(2.2) 		358.4
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 356.2
(-2.4)
P 		653.3
(2.2)
P 		316
(-3)
P 		430.8
(-1.2)
P 		706.7
(3)
P 		598.3
(1.3)
P 		391
B 965.4
(2.2)
P 		857.4
(1.4)
P 		300.2
(-3)
P 		579.7
(-0.8)
P 		803.9
(1)
P 		1061.9
(3)
P 		762
C 888.9
(2.2)
P 		699.8
(-0)
P 		454.9
(-2.9)
P 		450.5
(-3)
P 		772.3
(0.8)
P 		956.8
(3)
P 		506
avr 736.8
(1.4) 		736.8
(1.4) 		357
(-3) 		487
(-1.5) 		761
(1.7) 		872.3
(3) 		515
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21298
Sequence Type Exemplar sequence
Representative Public ID C55314 NCBI
Target Description C55314_rc /REP_DB=TREMBL Accession /GB=C55314 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk202a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC518.3b ENSEMBL cdna:known chromosome:CEL140:IV:12361539:12371817:1 gene:ZC518.3 11/11 None
ZC518.3c ENSEMBL cdna:known chromosome:CEL140:IV:12362431:12371817:1 gene:ZC518.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12371418-12371745(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC518.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54512 Hypothetical protein ZC518.3b [Caenorhabditis elegans] ref|NP_001023607.1| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] 0.0
blast CAB54511 Hypothetical protein ZC518.3a [Caenorhabditis elegans] ref|NP_502355.2| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] gb|AAK85706.1| CCR4 [Caenorhabditis elegans] 0.0
blast CAD45610 Hypothetical protein ZC518.3c [Caenorhabditis elegans] ref|NP_001023608.1| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0047
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0047
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-35
Sequence
Target Sequence 
>C. ELEGANS:174257_AT
gaagccggaggtatacgagatgcgcgcgatgctcgctggtcgagtttctctacctgacct
ctcctctcgttgtgtgctatttcaccgtctatattccaataactacctacaataatacct
tatttccgtttctggtcctatgtatagttaaagacttactttttggcattcttcaccctc
tgcttccttctctctctctcacaaactctcccacactctcgtccaagttgcgtgtttctg
ctttgaattctttgttatcggtctcggatataacgtttctccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGGAGGTATACGAGATGCGC 376 343 22 Antisense
ATACGAGATGCGCGCGATGCTCGCT 95 23 34 Antisense
GATGCTCGCTGGTCGAGTTTCTCTA 75 415 49 Antisense
CCTCTCGTTGTGTGCTATTTCACCG 677 265 84 Antisense
ATTTCACCGTCTATATTCCAATAAC 25 17 100 Antisense
CTTATTTCCGTTTCTGGTCCTATGT 424 221 140 Antisense
GACTTACTTTTTGGCATTCTTCACC 507 371 174 Antisense
CACACTCTCGTCCAAGTTGCGTGTT 441 193 233 Antisense
GTTGCGTGTTTCTGCTTTGAATTCT 580 439 248 Antisense
TGAATTCTTTGTTATCGGTCTCGGA 562 575 265 Antisense
GGTCTCGGATATAACGTTTCTCCTA 612 501 281 Antisense
Sequence Source Affymetrix Proprietary Database