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[174256_at]

Description C32145_rc /REP_DB=TREMBL Accession /GB=C32145 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 46      6grp_highest_nonorm > 80      6grp_total > 92      4grp_total > 49      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 570
1 2 3 4 range
A 45.4
(-3)
A 		477.5
(3)
P 		434
(2.4)
P 		52.6
(-2.9)
P 		432
B 17.7
(-3)
A 		507.6
(2.8)
P 		525.1
(3)
P 		52
(-2.6)
P 		507
C 67.2
(-2.7)
P 		587.6
(3)
P 		535
(2.4)
P 		36.1
(-3)
P 		552
avr 43.4
(-3) 		524.2
(3) 		498
(2.7) 		46.9
(-3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 133.9
(-3)
P 		293.3
(3)
P 		158.2
(-2.1)
P 		175.7
(-1.4)
P 		270.7
(2.2)
P 		132.9
(-3)
P 		160
B 115.5
(-3)
P 		312.3
(3)
P 		120
(-2.9)
P 		302
(2.7)
P 		270.5
(1.7)
P 		131.2
(-2.5)
P 		197
C 101.6
(-3)
P 		277.9
(2.9)
P 		203.7
(0.4)
P 		282
(3)
P 		261.2
(2.3)
P 		101.1
(-3)
P 		181
avr 117
(-3) 		294.5
(3) 		160.6
(-1.5) 		253.2
(1.6) 		267.5
(2.1) 		121.7
(-2.8) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 16.5
(-2.5)
A 		103.7
(2.4)
P 		113.5
(3)
P 		7.7
(-3)
P 		106
B 5.6
(-3)
A 		125.4
(3)
P 		121.7
(2.8)
P 		11.1
(-2.7)
P 		120
C 22.2
(-2.5)
P 		168.9
(2.4)
P 		186.5
(3)
P 		6.1
(-3)
P 		180
avr 14.8
(-2.7) 		132.7
(2.6) 		140.6
(3) 		8.3
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 24.7
(-3)
P 		104.3
(3)
P 		34.4
(-2.3)
P 		44.6
(-1.5)
P 		81.7
(1.3)
P 		32.4
(-2.4)
P 		80
B 40.2
(-2.2)
P 		103.9
(2.6)
P 		29.1
(-3)
P 		80
(0.8)
P 		109.9
(3)
P 		48.9
(-1.5)
P 		81
C 37.7
(-2.5)
P 		84.8
(3)
P 		51.8
(-0.9)
P 		56.7
(-0.3)
P 		84.5
(3)
P 		33.8
(-3)
P 		51
avr 34.2
(-3) 		97.7
(3) 		38.4
(-2.6) 		60.4
(-0.5) 		92
(2.5) 		38.4
(-2.6) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22219
Sequence Type Exemplar sequence
Representative Public ID C32145 NCBI
Target Description C32145_rc /REP_DB=TREMBL Accession /GB=C32145 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171690 NCBI Caenorhabditis elegans Lin-12 and Glp-1 X-hybridizing family member (lgx-1) (lgx-1) mRNA, complete cds. 11/11 None
C54G7.3b ENSEMBL cdna:known chromosome:CEL140:X:5528180:5538470:-1 gene:C54G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180825 2 1 NM_171689 173661_s_at (11)
NM_171690 174256_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5528190-5528530(-) 100.0 100.0
Public Domain and Genome References
Ensembl C54G7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27230 Lin-12 and glp-1 x-hybridizing protein 1, isoform b [Caenorhabditis elegans] ref|NP_741796.1| Lin-12 and Glp-1 X-hybridizing family member (lgx-1) [Caenorhabditis elegans] 0.0
blast AAL27229 Lin-12 and glp-1 x-hybridizing protein 1, isoform a [Caenorhabditis elegans] ref|NP_741795.1| Lin-12 and Glp-1 X-hybridizing family member (lgx-1) [Caenorhabditis elegans] 0.0
blast CAE68840 Hypothetical protein CBG14801 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Sequence
Target Sequence 
>C. ELEGANS:174256_AT
acaagagtgccagagtgtaactaatttattgatccaatattctggatctatgaatatctt
tctcttcccttatcacaattacatcattacacacacacacacatacgttttcattcaaaa
aatctcactggtgataaacaaataactgtaatctgattcaatttttttgtgtctctgaaa
tgttacccaatttcccgttttgcctttctctcccatcttgaaatctttctcccacatccc
cacaatactaattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAGTGCCAGAGTGTAACTAAT 634 113 62 Antisense
GAGTGTAACTAATTTATTGATCCAA 396 399 74 Antisense
CTATGAATATCTTTCTCTTCCCTTA 343 225 109 Antisense
CTCTTCCCTTATCACAATTACATCA 583 229 123 Antisense
CACAATTACATCATTACACACACAC 101 195 135 Antisense
ATCTGATTCAATTTTTTTGTGTCTC 166 35 212 Antisense
TTTTGTGTCTCTGAAATGTTACCCA 190 677 226 Antisense
TCTGAAATGTTACCCAATTTCCCGT 61 607 235 Antisense
CTTTCTCTCCCATCTTGAAATCTTT 273 223 265 Antisense
CATCTTGAAATCTTTCTCCCACATC 363 213 275 Antisense
CCCACATCCCCACAATACTAATTGT 130 259 292 Antisense
Sequence Source Affymetrix Proprietary Database