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[174255_s_at]

Description C35341_rc /REP_DB=TREMBL Accession /GB=C35341 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk428h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 11      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 103.3
(-0.7)
P 		107.3
(-0.4)
P 		74.2
(-3)
M 		149.2
(3)
P 		75
B 126.5
(0.3)
P 		130.6
(0.6)
P 		89.4
(-3)
P 		157.4
(3)
P 		68
C 137.6
(-2.4)
P 		128.5
(-3)
P 		156
(-1.3)
P 		224.8
(3)
P 		96
avr 122.5
(-1.6) 		122.1
(-1.7) 		106.5
(-3) 		177.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 221.4
(3)
P 		156.8
(0.2)
P 		80.7
(-3)
P 		135.6
(-0.7)
P 		140.1
(-0.5)
P 		114.3
(-1.6)
P 		141
B 329.4
(3)
P 		121
(-2.8)
P 		112.4
(-3)
P 		139.8
(-2.2)
P 		169.3
(-1.4)
P 		145.8
(-2.1)
P 		217
C 214.7
(2.5)
P 		153.9
(-0.8)
P 		127.5
(-2.2)
P 		223.2
(3)
P 		113.6
(-3)
P 		141.2
(-1.5)
P 		110
avr 255.2
(3) 		143.9
(-1.5) 		106.9
(-3) 		166.2
(-0.6) 		141
(-1.6) 		133.8
(-1.9) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 37.6
(3)
P 		23.3
(-1.7)
P 		19.4
(-3)
M 		21.8
(-2.2)
P 		18
B 40.3
(3)
P 		32.3
(0.6)
P 		20.7
(-3)
P 		33.5
(0.9)
P 		20
C 45.5
(-0.1)
P 		36.9
(-3)
P 		54.4
(3)
P 		37.9
(-2.7)
P 		18
avr 41.1
(3) 		30.8
(-3) 		31.5
(-2.6) 		31.1
(-2.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 40.8
(0.6)
P 		55.8
(3)
P 		17.6
(-3)
P 		34.4
(-0.4)
P 		42.3
(0.9)
P 		27.8
(-1.4)
P 		38
B 114.6
(3)
P 		40.3
(-2.1)
P 		27.3
(-3)
P 		37
(-2.3)
P 		68.8
(-0.1)
P 		54.4
(-1.1)
P 		87
C 79.6
(3)
P 		47
(-1.2)
P 		32.5
(-3)
P 		44.9
(-1.4)
P 		36.7
(-2.5)
P 		47.3
(-1.1)
P 		47
avr 78.3
(3) 		47.7
(-0.5) 		25.8
(-3) 		38.8
(-1.5) 		49.3
(-0.3) 		43.2
(-1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174255_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20969
Sequence Type Exemplar sequence
Representative Public ID C35341 NCBI
Target Description C35341_rc /REP_DB=TREMBL Accession /GB=C35341 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk428h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067300 NCBI Caenorhabditis elegans ZK1010.8 (ZK1010.8) mRNA, complete cds. 11/11 None
ZK1010.8.1 ENSEMBL cdna:known chromosome:CEL140:III:12995254:13000186:-1 gene:ZK1010.8 11/11 A 
ZK1010.8.2 ENSEMBL cdna:known chromosome:CEL140:III:12995266:13000027:-1 gene:ZK1010.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12995311-12995595(-) 45.07 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.8
Entrez Gene 176722 Entrez gene
SwissProt O18287 EMBL-EBI
WormBase CE15509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04974 Hypothetical protein ZK1010.8 [Caenorhabditis elegans] ref|NP_499701.1| ZK1010.8 [Caenorhabditis elegans] 0.0
blast CAE69572 Hypothetical protein CBG15784 [Caenorhabditis briggsae] 1.0E-166
blast CAE71381 Hypothetical protein CBG18288 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499701.1 4 10-32,82-104,114-136,149-171
ZK1010.8.1 4 10-32,82-104,114-136,149-171
ZK1010.8.2 4 10-32,82-104,114-136,149-171
Sequence
Target Sequence 
>C. ELEGANS:174255_S_AT
aaggttctagaacattccaggatttttttaaagaatttttttcaaattcccttgccttaa
aatcacatctagcattcaatgccctttgcttccacataaatttccctttcaataatttcc
tttctcttttcctgtacatttgatgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTTCTAGAACATTCCAGGATTT 84 161 119 Antisense
TTCAAATTCCCTTGCCTTAAAATCA 36 685 159 Antisense
AATTCCCTTGCCTTAAAATCACATC 532 173 163 Antisense
CCCTTGCCTTAAAATCACATCTAGC 338 259 167 Antisense
AAATCACATCTAGCATTCAATGCCC 381 117 178 Antisense
TAGCATTCAATGCCCTTTGCTTCCA 67 653 188 Antisense
CCTTTGCTTCCACATAAATTTCCCT 341 265 201 Antisense
GCTTCCACATAAATTTCCCTTTCAA 229 305 206 Antisense
CCACATAAATTTCCCTTTCAATAAT 309 275 210 Antisense
CTTTCTCTTTTCCTGTACATTTGAT 304 223 238 Antisense
CTCTTTTCCTGTACATTTGATGATG 211 231 242 Antisense
Sequence Source Affymetrix Proprietary Database