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[174254_at]

Description C30722_rc /REP_DB=TREMBL Accession /GB=C30722 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1400
1 2 3 4 range
A 138.4
(-3)
P 		1522.3
(3)
P 		1295.9
(2)
P 		137.7
(-3)
P 		1385
B 129.4
(-3)
P 		1297.2
(2)
P 		1528.2
(3)
P 		128
(-3)
A 		1400
C 149.8
(-3)
A 		1228.8
(2.7)
P 		1281.3
(3)
P 		157.1
(-3)
P 		1132
avr 139.2
(-3) 		1349.4
(2.9) 		1368.5
(3) 		140.9
(-3) 		1229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 736.1
(0.5)
P 		628.1
(-0.8)
P 		807.8
(1.4)
P 		943.3
(3)
P 		816.3
(1.5)
P 		439.6
(-3)
P 		504
B 731.6
(-0.3)
P 		689.4
(-0.8)
P 		900.7
(1.6)
P 		1021.2
(3)
P 		903.2
(1.7)
P 		492.6
(-3)
P 		529
C 566
(-2.1)
P 		677.7
(-0.8)
P 		733.8
(-0.2)
P 		1025.1
(3)
P 		679.8
(-0.8)
P 		482.3
(-3)
P 		543
avr 677.9
(-0.6) 		665.1
(-0.8) 		814.1
(0.9) 		996.5
(3) 		799.8
(0.8) 		471.5
(-3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 50.4
(-2.4)
P 		330.5
(2.8)
P 		338.8
(3)
P 		20.2
(-3)
P 		319
B 41.3
(-2.7)
P 		320.4
(2.4)
P 		354.1
(3)
P 		27.3
(-3)
A 		327
C 49.6
(-2.7)
A 		353.3
(1.7)
P 		446.6
(3)
P 		26.5
(-3)
P 		420
avr 47.1
(-2.6) 		334.7
(2.2) 		379.8
(3) 		24.7
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 135.7
(-1.8)
P 		223.4
(2)
P 		175.9
(-0)
P 		239.3
(2.7)
P 		246.3
(3)
P 		107
(-3)
P 		139
B 254.6
(-0.7)
P 		229.5
(-1.5)
P 		218.7
(-1.9)
P 		270.5
(-0.2)
P 		367
(3)
P 		183.7
(-3)
P 		183
C 209.8
(2)
P 		206.8
(1.6)
P 		186.8
(-0.4)
P 		206.1
(1.6)
P 		220
(3)
P 		161.5
(-3)
P 		59
avr 200
(-0.7) 		219.9
(0.3) 		193.8
(-1) 		238.6
(1.1) 		277.8
(3) 		150.7
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22179
Sequence Type Exemplar sequence
Representative Public ID C30722 NCBI
Target Description C30722_rc /REP_DB=TREMBL Accession /GB=C30722 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk257d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076442 NCBI Caenorhabditis elegans M03F4.6 (M03F4.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000026199 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4964473:4969288:-1 11/11 None
M03F4.6 ENSEMBL cdna:known chromosome:CEL140:X:4964391:4969326:-1 gene:M03F4.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
M03F4.2a.3 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4964453-4966172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F4.6
Entrez Gene 180768 Entrez gene
SwissProt Q23015 EMBL-EBI
WormBase CE28621 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04576 Hypothetical protein M03F4.6 [Caenorhabditis elegans] ref|NP_508843.1| M03F4.6 [Caenorhabditis elegans] 0.0
blast CAE68671 Hypothetical protein CBG14575 [Caenorhabditis briggsae] 0.0
blast T25841 hypothetical protein M03F4.6 - Caenorhabditis elegans 5.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.9E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.8E-8
Sequence
Target Sequence 
>C. ELEGANS:174254_AT
aaagatcaactactaggagtccgttgcacaaatccagatgatccgctcagtattggctca
attttggaccgcgtcggagacatcttcggaaacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATCAACTACTAGGAGTCCGTT 187 119 168 Antisense
CTAGGAGTCCGTTGCACAAATCCAG 295 225 180 Antisense
GAGTCCGTTGCACAAATCCAGATGA 180 401 184 Antisense
GCACAAATCCAGATGATCCGCTCAG 466 317 193 Antisense
AAATCCAGATGATCCGCTCAGTATT 107 119 197 Antisense
AGATGATCCGCTCAGTATTGGCTCA 649 67 203 Antisense
TGATCCGCTCAGTATTGGCTCAATT 631 565 206 Antisense
TATTGGCTCAATTTTGGACCGCGTC 633 665 218 Antisense
TTTGGACCGCGTCGGAGACATCTTC 650 665 230 Antisense
ACCGCGTCGGAGACATCTTCGGAAA 603 89 235 Antisense
GTCGGAGACATCTTCGGAAACAAAC 99 471 240 Antisense
Sequence Source Affymetrix Proprietary Database