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[174253_at]

Description C54785_rc /REP_DB=TREMBL Accession /GB=C54785 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk408a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 70      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 326.9
(0.5)
P 		146.6
(-3)
P 		238.9
(-1.2)
P 		455.8
(3)
P 		309
B 241.1
(-1.3)
P 		166.9
(-2.7)
P 		149.3
(-3)
P 		480.2
(3)
P 		331
C 226.7
(-1)
P 		150.2
(-3)
P 		184.3
(-2.1)
P 		378.3
(3)
P 		228
avr 264.9
(-0.7) 		154.6
(-3) 		190.8
(-2.2) 		438.1
(3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 441.3
(3)
P 		250.3
(-0.7)
P 		147.1
(-2.7)
P 		129.5
(-3)
P 		256.4
(-0.6)
P 		383.1
(1.9)
P 		312
B 439.3
(3)
P 		331
(0.3)
P 		200.5
(-3)
P 		293.4
(-0.7)
P 		241.9
(-2)
P 		361.5
(1)
P 		239
C 403.4
(3)
P 		325.8
(0.9)
P 		183.7
(-2.9)
P 		192.6
(-2.7)
P 		181.4
(-3)
P 		323.5
(0.8)
P 		222
avr 428
(3) 		302.4
(-0) 		177.1
(-3) 		205.2
(-2.3) 		226.6
(-1.8) 		356
(1.3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 119
(3)
P 		31.8
(-3)
P 		62.4
(-0.9)
P 		66.7
(-0.6)
P 		87
B 76.9
(0.7)
P 		41.2
(-2.4)
P 		34.6
(-3)
P 		102.3
(3)
P 		68
C 75
(3)
P 		43.2
(-3)
P 		64.2
(1)
P 		63.8
(0.9)
P 		32
avr 90.3
(3) 		38.7
(-3) 		53.7
(-1.3) 		77.6
(1.5) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 81.3
(1.8)
P 		89
(2.6)
P 		32
(-3)
P 		32.9
(-2.9)
P 		77.4
(1.4)
P 		93.3
(3)
P 		61
B 152.8
(3)
P 		110.2
(0.5)
P 		48.7
(-3)
P 		77.7
(-1.3)
P 		98.3
(-0.1)
P 		134.8
(2)
P 		104
C 149.5
(3)
P 		99.4
(0.3)
P 		46.8
(-2.6)
P 		38.7
(-3)
P 		58.7
(-1.9)
P 		108.3
(0.8)
P 		111
avr 127.9
(3) 		99.5
(1) 		42.5
(-3) 		49.8
(-2.5) 		78.1
(-0.5) 		112.1
(1.9) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21296
Sequence Type Exemplar sequence
Representative Public ID C54785 NCBI
Target Description C54785_rc /REP_DB=TREMBL Accession /GB=C54785 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk408a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49H3.5a ENSEMBL cdna:known chromosome:CEL140:IV:7910583:7915157:1 gene:C49H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7914384-7914665(+) 100.0 100.0
Public Domain and Genome References
Ensembl C49H3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99894 Not-like (yeast ccr4/not complex component) protein 4, isoform a [Caenorhabditis elegans] ref|NP_741453.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) [Caenorhabditis elegans] 0.0
blast T34180 hypothetical protein C49H3.5 - Caenorhabditis elegans 0.0
blast CAE70907 Hypothetical protein CBG17704 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.3E-6
Sequence
Target Sequence 
>C. ELEGANS:174253_AT
tcccgttcccggttgttgtagatgattcttttttaatatcatcaactccaacacattcta
ttattcttcataataatattcttcatatgttattggctctcttctttaatcattttgtcc
tctcttacgacatgtatcattagctcattttgttggagtcgcctccgcctcgaattcaga
ttcttattcgtgtttgttgctcctctcccatagaaaatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGTTCCCGGTTGTTGTAGATGA 370 595 24 Antisense
TCCCGGTTGTTGTAGATGATTCTTT 568 597 30 Antisense
TTCTTTTTTAATATCATCAACTCCA 384 689 49 Antisense
ATCAACTCCAACACATTCTATTATT 637 25 64 Antisense
TTCATATGTTATTGGCTCTCTTCTT 489 689 105 Antisense
GGCTCTCTTCTTTAATCATTTTGTC 497 539 118 Antisense
TAATCATTTTGTCCTCTCTTACGAC 625 633 130 Antisense
GTCCTCTCTTACGACATGTATCATT 300 477 140 Antisense
TGTATCATTAGCTCATTTTGTTGGA 17 561 156 Antisense
CTCCGCCTCGAATTCAGATTCTTAT 119 235 186 Antisense
TTGCTCCTCTCCCATAGAAAATGCT 634 701 220 Antisense
Sequence Source Affymetrix Proprietary Database