[Home] | [Total List]

[174252_at]

Description C51599_rc /REP_DB=TREMBL Accession /GB=C51599 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_high_8_8 > 38      6grp_highest_nonorm > 50      6grp_total > 09      4grp_total > 41      6grp_cgc > 10      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 700
1 2 3 4 range
A 44.1
(-3)
P 		723.9
(3)
P 		541.4
(1.4)
P 		285.1
(-0.9)
P 		680
B 59.5
(-3)
A 		744.4
(3)
P 		694.5
(2.6)
P 		563.8
(1.4)
P 		685
C 69.9
(-3)
P 		536.4
(2.2)
P 		613
(3)
P 		485.1
(1.6)
P 		543
avr 57.8
(-3) 		668.2
(3) 		616.3
(2.5) 		444.7
(0.8) 		610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1215
1 2 3 4 5 6 range
A 1349.3
(3)
P 		376.8
(-1.8)
P 		456.9
(-1.4)
P 		408.8
(-1.6)
P 		336.2
(-2)
P 		134.1
(-3)
P 		1215
B 760.8
(2.6)
P 		369.2
(-1.4)
P 		659.9
(1.6)
P 		795.2
(3)
P 		268.3
(-2.4)
P 		210.4
(-3)
P 		585
C 867.2
(3)
P 		432.6
(-1.2)
P 		411.2
(-1.4)
P 		439
(-1.1)
P 		286.1
(-2.6)
P 		244.7
(-3)
P 		623
avr 992.4
(3) 		392.9
(-1.5) 		509.3
(-0.6) 		547.7
(-0.4) 		296.9
(-2.2) 		196.4
(-3) 		796
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 16.1
(-3)
P 		157.1
(3)
P 		141.5
(2.3)
P 		41.7
(-1.9)
P 		141
B 19
(-3)
A 		183.8
(3)
P 		160.9
(2.2)
P 		120.1
(0.7)
P 		165
C 23.2
(-3)
P 		154.2
(1.1)
P 		213.6
(3)
P 		81.8
(-1.2)
P 		190
avr 19.4
(-3) 		165
(2.7) 		172
(3) 		81.2
(-0.6) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 248.7
(3)
P 		134
(-0.2)
P 		99.5
(-1.1)
P 		103.7
(-1)
P 		101.4
(-1.1)
P 		32.6
(-3)
P 		216
B 264.7
(3)
P 		122.9
(-1.6)
P 		160.2
(-0.4)
P 		210.6
(1.3)
P 		109
(-2)
P 		78.4
(-3)
P 		186
C 321.4
(3)
P 		132
(-1.7)
P 		104.7
(-2.4)
P 		88.3
(-2.8)
P 		92.6
(-2.7)
P 		81.9
(-3)
P 		240
avr 278.3
(3) 		129.6
(-1.2) 		121.5
(-1.4) 		134.2
(-1) 		101
(-2) 		64.3
(-3) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20978
Sequence Type Exemplar sequence
Representative Public ID C51599 NCBI
Target Description C51599_rc /REP_DB=TREMBL Accession /GB=C51599 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066269 NCBI Caenorhabditis elegans ZK783.1 (ZK783.1) mRNA, complete cds. 11/11 None
ZK783.1 ENSEMBL cdna:known chromosome:CEL140:III:7625886:7640998:1 gene:ZK783.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7640561-7640880(+) 83.39 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fbn-1
Ensembl ZK783.1
Entrez Gene 176076 Entrez gene
SwissProt Q23587 EMBL-EBI
WormBase CE25695 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24418 Hypothetical protein ZK783.1 [Caenorhabditis elegans] ref|NP_498670.1| ZK783.1 [Caenorhabditis elegans] 0.0
blast CAE57171 Hypothetical protein CBG00005 [Caenorhabditis briggsae] 0.0
blast CAG10182 unnamed protein product [Tetraodon nigroviridis] 5.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 4.4E-11
Sequence
Target Sequence 
>C. ELEGANS:174252_AT
gctacatacttgttacattccaatatttttgttattttatttacctacttttttattctt
taaatcccccaaaacttctctgaaatctccgacaacactaacaaattgctcagggttttg
atcgaaaccaaacagaattttctcttttgttttaaaattttatttgataatttctaattt
tctaaactttttatttaattatcgtatttatcacatctctacagcttttctctaccatta
cgtgtgcctcgttttccaatttttctcaattttcttttaatttgtgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACATACTTGTTACATTCCAATA 332 303 13 Antisense
ACTTGTTACATTCCAATATTTTTGT 353 103 20 Antisense
ATCCCCCAAAACTTCTCTGAAATCT 49 39 76 Antisense
ACTTCTCTGAAATCTCCGACAACAC 521 103 86 Antisense
GAAATCTCCGACAACACTAACAAAT 146 363 94 Antisense
AACACTAACAAATTGCTCAGGGTTT 120 135 106 Antisense
AAATTGCTCAGGGTTTTGATCGAAA 469 113 115 Antisense
TCGAAACCAAACAGAATTTTCTCTT 559 599 134 Antisense
AATTATCGTATTTATCACATCTCTA 45 177 209 Antisense
AGCTTTTCTCTACCATTACGTGTGC 125 79 235 Antisense
CTCAATTTTCTTTTAATTTGTGCCT 83 227 277 Antisense
Sequence Source Affymetrix Proprietary Database