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[174250_at]

Description C58956_rc /REP_DB=TREMBL Accession /GB=C58956 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384a5 : 3prime end, single read.
Cluster 6grp_total > 32      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 33.6
(-3)
A 		38.1
(-1.1)
A 		42.9
(1)
A 		47.5
(3)
A 		14
B 39.1
(-3)
A 		54.6
(0.9)
A 		51.2
(0)
A 		63.1
(3)
A 		24
C 52.9
(-2.5)
A 		99.5
(3)
A 		48.4
(-3)
A 		64.8
(-1.1)
A 		51
avr 41.9
(-3) 		64.1
(3) 		47.5
(-1.5) 		58.5
(1.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 78.8
(3)
A 		23
(-2.4)
A 		57.5
(0.9)
A 		17.1
(-3)
A 		71.2
(2.3)
A 		36.1
(-1.2)
A 		62
B 49.9
(0.5)
A 		54.3
(0.8)
A 		69.6
(2)
A 		81.9
(3)
A 		64.7
(1.6)
A 		5.5
(-3)
A 		76
C 64.1
(1.4)
A 		75.6
(3)
M 		62.5
(1.2)
A 		46
(-1.1)
A 		57
(0.4)
A 		32.1
(-3)
A 		44
avr 64.3
(3) 		51
(1) 		63.2
(2.8) 		48.3
(0.6) 		64.3
(3) 		24.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.2
(3)
A 		8.3
(-1.5)
A 		11.2
(1.8)
A 		7
(-3)
A 		5
B 12.5
(-0.8)
A 		13.5
(3)
A 		11.9
(-3)
A 		13.4
(2.6)
A 		2
C 17.5
(-0.8)
A 		28.6
(3)
A 		16.9
(-1)
A 		10.9
(-3)
A 		18
avr 14.1
(0.5) 		16.8
(3) 		13.3
(-0.3) 		10.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 14.5
(0.6)
A 		8.2
(-1.6)
A 		12.5
(-0.1)
A 		4.3
(-3)
A 		21.5
(3)
A 		8.8
(-1.4)
A 		17
B 17.4
(0.8)
A 		18.1
(1)
A 		16.9
(0.7)
A 		21.7
(1.9)
A 		26.3
(3)
A 		2
(-3)
A 		24
C 23.8
(3)
A 		23.1
(2.7)
M 		15.9
(-0.2)
A 		9.2
(-3)
A 		18.4
(0.8)
A 		10.8
(-2.3)
A 		15
avr 18.6
(1.6) 		16.5
(0.7) 		15.1
(0.2) 		11.7
(-1.2) 		22.1
(3) 		7.2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20288
Sequence Type Exemplar sequence
Representative Public ID C58956 NCBI
Target Description C58956_rc /REP_DB=TREMBL Accession /GB=C58956 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58956
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58956 C58956_rc /REP_DB=TREMBL Accession /GB=C58956 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384a5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059466 11/11 Negative Strand Matching Probes A B 
NM_059463 11/11 Negative Strand Matching Probes A B 
NM_059464 11/11 Negative Strand Matching Probes A B 
NM_170882 11/11 Negative Strand Matching Probes A B 
SNAP00000038297 11/11 Negative Strand Matching Probes None
GENEFINDER00000038315 11/11 Negative Strand Matching Probes None
K06A5.8d 11/11 Negative Strand Matching Probes A B 
K06A5.8b 11/11 Negative Strand Matching Probes A B 
K06A5.8a.2 11/11 Negative Strand Matching Probes None
K06A5.8a.1 11/11 Negative Strand Matching Probes None
K06A5.8c 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6494549-6494827(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174250_AT
gttcttgccaattgacttgattccatcatttcatcaattagaagactctgcgccattgca
tcagcttctgttattgccgttcccaaacaaaatcctgcagctgttgactgtgacattgga
tggccacgtggcaccgatgggaacattgaagtggtcaaatcggctgggggaagcatgctc
attgtcattgattggctcattttctccgcgaattttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTGCCAATTGACTTGATTCCA 164 443 15 Antisense
TAGAAGACTCTGCGCCATTGCATCA 467 651 53 Antisense
GCATCAGCTTCTGTTATTGCCGTTC 303 309 72 Antisense
TTGCCGTTCCCAAACAAAATCCTGC 107 695 88 Antisense
AAATCCTGCAGCTGTTGACTGTGAC 444 119 104 Antisense
GACTGTGACATTGGATGGCCACGTG 309 375 120 Antisense
GCCACGTGGCACCGATGGGAACATT 416 279 137 Antisense
GAAGTGGTCAAATCGGCTGGGGGAA 372 333 162 Antisense
GGGGGAAGCATGCTCATTGTCATTG 83 499 180 Antisense
GTCATTGATTGGCTCATTTTCTCCG 633 467 198 Antisense
GCTCATTTTCTCCGCGAATTTTAAT 368 301 209 Antisense
Sequence Source Affymetrix Proprietary Database