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[174249_at]

Description C52802_rc /REP_DB=TREMBL Accession /GB=C52802 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk249f4 : 3prime end, single read.
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 43.2
(-2.4)
A 		19.5
(-3)
A 		24.5
(-2.9)
A 		260.4
(3)
P 		241
B 43.4
(-2.8)
A 		70.6
(-1.1)
A 		40.3
(-3)
A 		137.8
(3)
A 		98
C 46.9
(-2.1)
A 		17.9
(-3)
A 		50.8
(-2)
A 		222.2
(3)
P 		204
avr 44.5
(-2.7) 		36
(-3) 		38.5
(-2.9) 		206.8
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 79.6
(-3)
A 		96.3
(-2.7)
A 		125.7
(-2.2)
P 		97.4
(-2.7)
A 		407.4
(3)
P 		353.8
(2)
P 		328
B 40.2
(-2.8)
A 		83
(-2.1)
A 		25.2
(-3)
A 		237.8
(0.2)
P 		351.2
(1.9)
P 		424.7
(3)
P 		400
C 15.8
(-3)
A 		119.1
(-1.6)
P 		110.8
(-1.8)
A 		243
(-0)
P 		271.6
(0.3)
P 		474.5
(3)
P 		459
avr 45.2
(-3) 		99.5
(-2.1) 		87.2
(-2.3) 		192.7
(-0.6) 		343.4
(1.8) 		417.7
(3) 		373
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 15.7
(-1)
A 		4.2
(-3)
A 		6.4
(-2.6)
A 		38.1
(3)
P 		34
B 13.8
(-1.7)
A 		17.4
(-0.6)
A 		9.3
(-3)
A 		29.4
(3)
A 		20
C 15.5
(-1.1)
A 		5.1
(-3)
A 		17.7
(-0.7)
A 		37.5
(3)
P 		32
avr 15
(-1.6) 		8.9
(-3) 		11.1
(-2.5) 		35
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 14.7
(-3)
A 		34.3
(-1.9)
A 		27.4
(-2.3)
P 		24.7
(-2.4)
A 		122.9
(3)
P 		86.1
(1)
P 		108
B 14
(-2.7)
A 		27.6
(-2.2)
A 		6.1
(-3)
A 		63
(-0.8)
P 		142.7
(2.4)
P 		158.4
(3)
P 		152
C 5.9
(-3)
A 		36.3
(-1.8)
P 		28.2
(-2.1)
A 		48.9
(-1.3)
P 		87.9
(0.2)
P 		158.8
(3)
P 		153
avr 11.5
(-3) 		32.7
(-2) 		20.6
(-2.6) 		45.5
(-1.3) 		117.8
(2.2) 		134.4
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20965
Sequence Type Exemplar sequence
Representative Public ID C52802 NCBI
Target Description C52802_rc /REP_DB=TREMBL Accession /GB=C52802 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk249f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C14B1.7 ENSEMBL cdna:known chromosome:CEL140:III:3719951:3723575:-1 gene:C14B1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3719960-3720245(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14B1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497754 C14B1.7 [Caenorhabditis elegans] 0.0
blast CAA86741 Hypothetical protein C16C10.3 [Caenorhabditis elegans] ref|NP_497834.1| C16C10.3 [Caenorhabditis elegans] sp|Q09249|YQ53_CAEEL Hypothetical protein C16C10.3 in chromosome III 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 2.7E-46
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174249_AT
ccaattctttatgcacgcccaattgattttccttgattttatagtatttgctctcctatc
actggagtttccccccatcactctaactactttaaatatgccgaacatttgaactgtaat
ttcctcttcgtgttcgattgtttttttgtcccatcaccggttctgtagtaattaaattaa
atgtagagtagcatgtattttgtagtagtagccctgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATTCTTTATGCACGCCCAATTG 93 277 29 Antisense
TGCACGCCCAATTGATTTTCCTTGA 54 577 40 Antisense
TTTTCCTTGATTTTATAGTATTTGC 373 675 55 Antisense
TAGTATTTGCTCTCCTATCACTGGA 682 653 70 Antisense
GCTCTCCTATCACTGGAGTTTCCCC 534 299 78 Antisense
CCCCATCACTCTAACTACTTTAAAT 157 261 101 Antisense
AATATGCCGAACATTTGAACTGTAA 621 171 123 Antisense
TGAACTGTAATTTCCTCTTCGTGTT 65 575 138 Antisense
ATTTCCTCTTCGTGTTCGATTGTTT 586 17 147 Antisense
TCCCATCACCGGTTCTGTAGTAATT 650 597 177 Antisense
GTATTTTGTAGTAGTAGCCCTGTTT 557 451 223 Antisense
Sequence Source Affymetrix Proprietary Database