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[174248_at]

Description C30795_rc /REP_DB=TREMBL Accession /GB=C30795 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk258d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 281.6
(3)
P 		49.2
(-2.8)
P 		42.8
(-3)
A 		82.9
(-2)
P 		239
B 237.9
(3)
P 		50.4
(-2.9)
P 		66.5
(-2.4)
A 		48.1
(-3)
A 		190
C 276
(3)
P 		59.5
(-3)
P 		69.5
(-2.7)
P 		99.6
(-1.9)
P 		217
avr 265.2
(3) 		53
(-3) 		59.6
(-2.8) 		76.9
(-2.3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 323.2
(3)
P 		131
(-1.6)
P 		96.3
(-2.4)
P 		71.5
(-3)
P 		106.6
(-2.2)
P 		72.9
(-3)
P 		252
B 357.8
(3)
P 		161
(-0.7)
P 		111.5
(-1.6)
P 		77.6
(-2.2)
P 		37.1
(-3)
P 		90.6
(-2)
P 		321
C 333.2
(3)
P 		206.6
(0.3)
P 		116.7
(-1.7)
P 		75.4
(-2.6)
P 		61.2
(-2.9)
P 		54.6
(-3)
P 		279
avr 338.1
(3) 		166.2
(-0.8) 		108.2
(-2.1) 		74.8
(-2.9) 		68.3
(-3) 		72.7
(-2.9) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 102.5
(3)
P 		10.7
(-3)
P 		11.2
(-3)
A 		12.1
(-2.9)
P 		92
B 75.9
(3)
P 		12.5
(-2.8)
P 		15.4
(-2.5)
A 		10.3
(-3)
A 		66
C 91.4
(3)
P 		17.1
(-3)
P 		24.2
(-2.4)
P 		16.8
(-3)
P 		75
avr 89.9
(3) 		13.4
(-3) 		16.9
(-2.7) 		13.1
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 59.6
(3)
P 		46.6
(1.1)
P 		21
(-2.5)
P 		18.1
(-2.9)
P 		32.2
(-0.9)
P 		17.7
(-3)
P 		42
B 124.5
(3)
P 		53.6
(-0.9)
P 		27.1
(-2.3)
P 		20.6
(-2.7)
P 		15.1
(-3)
P 		33.8
(-2)
P 		109
C 123.5
(3)
P 		63
(-0.4)
P 		29.7
(-2.2)
P 		15.2
(-3)
P 		19.8
(-2.7)
P 		18.3
(-2.8)
P 		108
avr 102.5
(3) 		54.4
(-0.4) 		25.9
(-2.4) 		18
(-3) 		22.4
(-2.7) 		23.3
(-2.6) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22265
Sequence Type Exemplar sequence
Representative Public ID C30795 NCBI
Target Description C30795_rc /REP_DB=TREMBL Accession /GB=C30795 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk258d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R07B1.1 ENSEMBL cdna:known chromosome:CEL140:X:9847208:9849664:1 gene:R07B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9849375-9849654(+) 100.0 100.0
Public Domain and Genome References
Ensembl R07B1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88539 Hypothetical protein R07B1.1 [Caenorhabditis elegans] ref|NP_509648.1| Variable ABnormal morphology family member (vab-15) [Caenorhabditis elegans] gb|AAF88063.1| VAB-15 [Caenorhabditis elegans] sp|Q09604|VAB15_CAEEL Homeobox protein vab-15 2.0E-95
blast CAE58718 Hypothetical protein CBG01903 [Caenorhabditis briggsae] 8.0E-76
blast CAA10201 Msx protein [Branchiostoma floridae] 6.0E-33
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.00000003404354E-18
Pfam IPR001356 EMBL-EBI Homeobox 1.4E-28
Sequence
Target Sequence 
>C. ELEGANS:174248_AT
cattcagttattagtccggttccaacaaaaaaaactatatgcaattccacattcctgaac
ttgttccccatttctttcacattgtgttgtgggctaattcgcttttcattttgcacattt
tctttattcgttagcaaactgttttattaatcatctaaagttgcaaaatacatgtgatct
ctttaaaaatgaataggttaaaaacttaaatgtttagcgccacttgtttatatttcctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCAGTTATTAGTCCGGTTCCAA 145 213 20 Antisense
AACTATATGCAATTCCACATTCCTG 327 139 52 Antisense
ATTCCACATTCCTGAACTTGTTCCC 354 7 63 Antisense
TCCCCATTTCTTTCACATTGTGTTG 319 597 84 Antisense
CATTGTGTTGTGGGCTAATTCGCTT 530 217 99 Antisense
GGCTAATTCGCTTTTCATTTTGCAC 118 539 111 Antisense
ATTTTGCACATTTTCTTTATTCGTT 171 15 127 Antisense
TTATTCGTTAGCAAACTGTTTTATT 290 677 143 Antisense
GTTGCAAAATACATGTGATCTCTTT 487 439 179 Antisense
ACTTAAATGTTTAGCGCCACTTGTT 326 99 223 Antisense
AGCGCCACTTGTTTATATTTCCTTA 269 83 235 Antisense
Sequence Source Affymetrix Proprietary Database