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[174247_at]

Description C38031_rc /REP_DB=TREMBL Accession /GB=C38031 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484h4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 98      6grp_total > 98      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 119.2
(-3)
A 		185
(3)
P 		156.7
(0.4)
P 		172.4
(1.9)
P 		66
B 111.6
(-3)
A 		167.3
(0.6)
P 		203.6
(3)
P 		198.7
(2.7)
P 		92
C 82.8
(-3)
A 		142.5
(-1.2)
P 		129.1
(-1.6)
P 		285.2
(3)
P 		202
avr 104.5
(-3) 		164.9
(0.2) 		163.1
(0.1) 		218.8
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1915
1 2 3 4 5 6 range
A 66.4
(-3)
A 		143.8
(-2.7)
P 		245.7
(-2.4)
P 		328
(-2.2)
P 		1459.4
(1.5)
P 		1920.7
(3)
P 		1854
B 93.8
(-3)
A 		149.3
(-2.8)
P 		179.9
(-2.7)
P 		343.3
(-2.2)
P 		1352
(1)
P 		1981.6
(3)
P 		1888
C 73.2
(-3)
P 		199
(-2.6)
P 		261.2
(-2.4)
P 		269
(-2.4)
P 		1514.8
(1.7)
P 		1931
(3)
P 		1858
avr 77.8
(-3) 		164
(-2.7) 		228.9
(-2.5) 		313.4
(-2.2) 		1442.1
(1.4) 		1944.4
(3) 		1867
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 43.4
(3)
A 		40.2
(1.9)
P 		41
(2.2)
P 		25.2
(-3)
P 		18
B 35.6
(-3)
A 		41.3
(-0.1)
P 		47.2
(3)
P 		42.4
(0.5)
P 		12
C 27.4
(-3)
A 		41
(0.9)
P 		45
(2.1)
P 		48.1
(3)
P 		21
avr 35.5
(-3) 		40.8
(0.6) 		44.4
(3) 		38.6
(-0.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 12.2
(-3)
A 		51.2
(-2.5)
P 		53.5
(-2.5)
P 		83.2
(-2.1)
P 		440.4
(2.6)
P 		467.6
(3)
P 		455
B 32.6
(-3)
A 		49.7
(-2.9)
P 		43.7
(-2.9)
P 		90.9
(-2.5)
P 		549.3
(1.4)
P 		738.9
(3)
P 		706
C 27.1
(-3)
P 		60.7
(-2.7)
P 		66.5
(-2.6)
P 		54.1
(-2.7)
P 		490.2
(1.5)
P 		646.4
(3)
P 		619
avr 24
(-3) 		53.9
(-2.7) 		54.6
(-2.7) 		76.1
(-2.5) 		493.3
(1.7) 		617.6
(3) 		594
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20315
Sequence Type Exemplar sequence
Representative Public ID C38031 NCBI
Target Description C38031_rc /REP_DB=TREMBL Accession /GB=C38031 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23G11.3 ENSEMBL cdna:known chromosome:CEL140:I:7703808:7706333:1 gene:T23G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7705923-7706227(+) 100.0 100.0
Public Domain and Genome References
Ensembl T23G11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03417 Hypothetical protein T23G11.3 [Caenorhabditis elegans] ref|NP_492143.1| defective in Germ Line Development family member (gld-1) [Caenorhabditis elegans] sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ line development protein 1) gb|AAC46632.1| female germline-specific tumor suppressor; similar to human GAP-associated tyrosine phosphoprotein p62, PIR Accession Number A38219, and C. elegans B0280.11 gene product encoded by GenBank Accession Number U10438 prf||2116296A tumor suppressor 0.0
blast CAE57359 Hypothetical protein CBG00303 [Caenorhabditis briggsae] 0.0
blast CAE67291 Hypothetical protein CBG12740 [Caenorhabditis briggsae] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 7.6E-5
Sequence
Target Sequence 
>C. ELEGANS:174247_AT
tgtgttatcttaacgctaacccctgtagaatcttcccggtttgatgtagtcatcaaaaat
ttttcatcttttctaaatttttagtaacttgagattttaattttctttcccgctagttag
atatgttcaaatctcacatccccatcaaaccagccccaagtccccattctaaacccctac
cccttcccaatctgtccattataattttaagcacaagtccaagagctaatatttttagca
gtctttcacattgaccattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTTATCTTAACGCTAACCCCTG 383 553 27 Antisense
TAACGCTAACCCCTGTAGAATCTTC 158 637 37 Antisense
CCTGTAGAATCTTCCCGGTTTGATG 376 265 48 Antisense
ATCTTCCCGGTTTGATGTAGTCATC 530 29 56 Antisense
TAATTTTCTTTCCCGCTAGTTAGAT 387 633 124 Antisense
TTTCCCGCTAGTTAGATATGTTCAA 17 671 132 Antisense
ATATGTTCAAATCTCACATCCCCAT 451 21 147 Antisense
CCTTCCCAATCTGTCCATTATAATT 588 269 208 Antisense
GCACAAGTCCAAGAGCTAATATTTT 545 315 237 Antisense
AATATTTTTAGCAGTCTTTCACATT 642 173 254 Antisense
TAGCAGTCTTTCACATTGACCATTT 60 653 262 Antisense
Sequence Source Affymetrix Proprietary Database