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[174246_at]

Description C30165_rc /REP_DB=TREMBL Accession /GB=C30165 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 80      6grp_total > 27      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 241.4
(1.6)
P 		198.4
(-0.2)
P 		276.4
(3)
P 		130.9
(-3)
P 		146
B 227.4
(-2.7)
P 		251.7
(-0.6)
P 		294.9
(3)
P 		223.4
(-3)
P 		72
C 319.7
(2)
P 		343.9
(3)
P 		274.3
(0.2)
P 		197.1
(-3)
P 		147
avr 262.8
(1.8) 		264.7
(1.9) 		281.9
(3) 		183.8
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 176.2
(-0.7)
P 		280.8
(3)
P 		145.1
(-1.8)
P 		111.6
(-3)
P 		196.8
(0)
P 		183.3
(-0.5)
P 		169
B 359
(3)
P 		214.1
(-1.1)
P 		213.9
(-1.1)
P 		261
(0.2)
P 		148
(-3)
P 		187.2
(-1.9)
P 		211
C 275.3
(3)
P 		173.7
(-1)
P 		198.5
(-0)
P 		183.5
(-0.6)
P 		123.8
(-3)
P 		234.1
(1.4)
P 		152
avr 270.2
(3) 		222.9
(0.5) 		185.8
(-1.4) 		185.4
(-1.5) 		156.2
(-3) 		201.5
(-0.6) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 87.9
(3)
P 		43.1
(-0.9)
P 		72.3
(1.6)
P 		19.2
(-3)
P 		69
B 72.5
(3)
P 		62.2
(0.5)
P 		68.3
(2)
P 		47.6
(-3)
P 		25
C 105.8
(3)
P 		98.9
(2.4)
P 		95.6
(2.2)
P 		33.2
(-3)
P 		73
avr 88.7
(3) 		68.1
(0.8) 		78.7
(1.9) 		33.3
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 32.5
(-2.6)
P 		99.9
(3)
P 		31.6
(-2.7)
P 		28.3
(-3)
P 		59.4
(-0.4)
P 		44.6
(-1.6)
P 		72
B 124.9
(3)
P 		71.3
(-1.4)
P 		51.9
(-3)
P 		69.1
(-1.6)
P 		60.1
(-2.3)
P 		69.8
(-1.5)
P 		73
C 102
(3)
P 		53
(-1.5)
P 		50.5
(-1.7)
P 		36.9
(-3)
P 		40.1
(-2.7)
P 		78.4
(0.8)
P 		65
avr 86.5
(3) 		74.7
(1.3) 		44.7
(-3) 		44.8
(-3) 		53.2
(-1.8) 		64.3
(-0.2) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22035
Sequence Type Exemplar sequence
Representative Public ID C30165 NCBI
Target Description C30165_rc /REP_DB=TREMBL Accession /GB=C30165 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076977 NCBI Caenorhabditis elegans C17H11.2 (C17H11.2) mRNA, complete cds. 11/11 None
C17H11.2 ENSEMBL cdna:known chromosome:CEL140:X:8169869:8172807:1 gene:C17H11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8172494-8172774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H11.2
Entrez Gene 181074 Entrez gene
SwissProt P91063 EMBL-EBI
WormBase CE27703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37983 Hypothetical protein C17H11.2 [Caenorhabditis elegans] ref|NP_509378.1| C17H11.2 [Caenorhabditis elegans] 0.0
blast CAE74853 Hypothetical protein CBG22703 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174246_AT
atcactttgttttatttgcttcctctttccacacaaatcatggatacatttatttgcata
tctcattttagaccctgtccttcgatacagaaaaaaacggtcattcccccctgccctcct
tgtttcccattattcttattactcctttgtcccaatcatgcccttcacaagacggttacc
tgtgtttctttcctgttgcaccatgaaattttcatcccattcgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACTTTGTTTTATTTGCTTCCTC 69 29 36 Antisense
CTTCCTCTTTCCACACAAATCATGG 603 219 54 Antisense
ACATTTATTTGCATATCTCATTTTA 596 105 81 Antisense
ATATCTCATTTTAGACCCTGTCCTT 139 21 93 Antisense
TAGACCCTGTCCTTCGATACAGAAA 306 651 104 Antisense
TCCTTGTTTCCCATTATTCTTATTA 78 591 152 Antisense
CATTATTCTTATTACTCCTTTGTCC 527 215 163 Antisense
AATCATGCCCTTCACAAGACGGTTA 392 167 189 Antisense
CACAAGACGGTTACCTGTGTTTCTT 500 193 201 Antisense
CCTGTTGCACCATGAAATTTTCATC 264 267 227 Antisense
ATGAAATTTTCATCCCATTCGAATT 101 45 238 Antisense
Sequence Source Affymetrix Proprietary Database