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[174245_at] phospholipase

Description C55937_rc /REP_DB=TREMBL Accession /GB=C55937 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231g7 : 3prime end, single read.
Cluster 6grp_total > 79      4grp_total > 32      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.3
(-2.8)
A 		2.1
(-3)
A 		7.1
(0.8)
A 		10
(3)
A 		8
B 2.3
(-3)
A 		9
(-1.6)
A 		30.4
(3)
A 		4.3
(-2.6)
A 		28
C 2.8
(-3)
A 		16.3
(-0.7)
A 		10
(-1.8)
A 		38.5
(3)
A 		36
avr 2.5
(-3) 		9.1
(-0.4) 		15.8
(2.3) 		17.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 2.7
(-3)
A 		12
(-2.2)
A 		4.9
(-2.8)
A 		15.9
(-1.9)
A 		29.5
(-0.8)
A 		75.9
(3)
P 		73
B 6.4
(-2.4)
A 		19.4
(-0.9)
A 		1.4
(-3)
A 		3.2
(-2.8)
A 		20.9
(-0.7)
A 		52.1
(3)
M 		51
C 12.1
(-2.2)
A 		4.5
(-3)
A 		7.3
(-2.7)
A 		10.2
(-2.4)
A 		46.8
(1.6)
A 		60
(3)
P 		56
avr 7.1
(-2.7) 		12
(-2.2) 		4.5
(-3) 		9.8
(-2.5) 		32.4
(-0.1) 		62.7
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.8
(-1.7)
A 		0.5
(-3)
A 		1.9
(3)
A 		1.5
(1.3)
A 		1
B 0.7
(-3)
A 		2.2
(-1.6)
A 		7
(3)
A 		0.9
(-2.8)
A 		6
C 0.9
(-3)
A 		4.7
(1.1)
A 		3.5
(-0.2)
A 		6.5
(3)
A 		6
avr 0.8
(-3) 		2.5
(0.1) 		4.1
(3) 		3
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.5
(-3)
A 		4.3
(-1.7)
A 		1.1
(-2.8)
A 		4
(-1.8)
A 		8.9
(-0.2)
A 		18.5
(3)
P 		18
B 2.2
(-2.4)
A 		6.5
(-1.1)
A 		0.3
(-3)
A 		0.9
(-2.8)
A 		8.5
(-0.4)
A 		19.4
(3)
M 		19
C 4.5
(-2)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		2.1
(-2.8)
A 		15.1
(1.4)
A 		20.1
(3)
P 		19
avr 2.4
(-2.6) 		4.1
(-2) 		1.1
(-3) 		2.3
(-2.6) 		10.8
(0.2) 		19.3
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20054
Sequence Type Exemplar sequence
Representative Public ID C55937 NCBI
Target Description C55937_rc /REP_DB=TREMBL Accession /GB=C55937 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk231g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058800 NCBI Caenorhabditis elegans D1037.5 (phospholipase) mRNA, complete cds. 11/11 None
SNAP00000024410 ENSEMBL cdna:SNAP chromosome:CEL140:I:3690183:3694016:-1 11/11 None
GENEFINDER00000024418 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3690183:3694016:-1 10/11 None
D1037.5 ENSEMBL cdna:known chromosome:CEL140:I:3690183:3694016:-1 gene:D1037.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3690224-3690869(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl D1037.5
Entrez Gene 171937 Entrez gene
WormBase CE39008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21368 Hypothetical protein D1037.5 [Caenorhabditis elegans] ref|NP_491201.1| D1037.5 [Caenorhabditis elegans] 0.0
blast T33857 hypothetical protein D1037.5 - Caenorhabditis elegans 0.0
blast CAE66684 Hypothetical protein CBG12023 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Sequence
Target Sequence 
>C. ELEGANS:174245_AT
gtgtcattcgatcaacgcaccttattttagattctcgcctcacttgtcgcaaggcatttc
tctggatgaaattgatttggaaaaggtgatgcaagtgatgtgggagactgaacaatacgt
ggcttcacataggcctcagtttgtgaagcttgtcaattacctggcaaccaaaccgaagag
agagggttttgaaaatcttgaaacatcgcaggattcggaaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCATTCGATCAACGCACCTTAT 531 483 34 Antisense
CGCACCTTATTTTAGATTCTCGCCT 50 255 49 Antisense
TCGCCTCACTTGTCGCAAGGCATTT 153 599 68 Antisense
GTCGCAAGGCATTTCTCTGGATGAA 173 475 79 Antisense
AGGTGATGCAAGTGATGTGGGAGAC 128 59 117 Antisense
GGGAGACTGAACAATACGTGGCTTC 249 495 135 Antisense
ACGTGGCTTCACATAGGCCTCAGTT 181 93 150 Antisense
TAGGCCTCAGTTTGTGAAGCTTGTC 442 653 163 Antisense
GAAGCTTGTCAATTACCTGGCAACC 506 341 178 Antisense
ACCTGGCAACCAAACCGAAGAGAGA 287 87 192 Antisense
GAAACATCGCAGGATTCGGAAACAT 85 357 233 Antisense
Sequence Source Affymetrix Proprietary Database