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[174244_at]

Description C58495_rc /REP_DB=TREMBL Accession /GB=C58495 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365h1 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 49.3
(-3)
A 		58.5
(-2.5)
A 		50.8
(-2.9)
A 		169
(3)
P 		120
B 81.1
(3)
A 		64.8
(1.2)
A 		28.2
(-3)
A 		68
(1.5)
A 		53
C 38.4
(-2.6)
A 		49.9
(-1.8)
A 		32.1
(-3)
A 		118.9
(3)
P 		87
avr 56.3
(-1.6) 		57.7
(-1.5) 		37
(-3) 		118.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 67.6
(3)
A 		11.9
(-3)
A 		46.8
(0.8)
A 		54.8
(1.6)
A 		47.3
(0.8)
A 		43.8
(0.4)
A 		56
B 23.2
(-1.4)
A 		29.8
(-0.7)
A 		64.2
(3)
A 		8
(-3)
A 		44.1
(0.9)
A 		28.3
(-0.8)
A 		56
C 28.7
(-0.5)
A 		49.3
(1.8)
A 		59.8
(3)
A 		47.3
(1.6)
A 		6.8
(-3)
A 		45
(1.3)
A 		53
avr 39.8
(-0.9) 		30.3
(-3) 		56.9
(3) 		36.7
(-1.6) 		32.7
(-2.5) 		39
(-1) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18
(-0.4)
A 		12.7
(-3)
A 		13.3
(-2.7)
A 		24.7
(3)
P 		12
B 25.8
(3)
A 		16
(-0)
A 		6.5
(-3)
A 		14.5
(-0.5)
A 		19
C 12.7
(-2)
A 		14.3
(-0.9)
A 		11.2
(-3)
A 		20
(3)
P 		9
avr 18.8
(2.4) 		14.3
(-0.4) 		10.3
(-3) 		19.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.5
(1.9)
A 		4.2
(-3)
A 		10.2
(0.6)
A 		13.9
(2.8)
A 		14.3
(3)
A 		10.7
(0.9)
A 		10
B 8.1
(-0.7)
A 		9.9
(-0)
A 		15.6
(2.1)
A 		2.1
(-3)
A 		17.9
(3)
A 		10.6
(0.2)
A 		16
C 10.6
(0.9)
A 		15
(2.9)
A 		15.2
(3)
A 		9.5
(0.4)
A 		2.2
(-3)
A 		15.1
(3)
A 		13
avr 10.4
(-0.8) 		9.7
(-1.6) 		13.7
(3) 		8.5
(-3) 		11.5
(0.5) 		12.1
(1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21914
Sequence Type Exemplar sequence
Representative Public ID C58495 NCBI
Target Description C58495_rc /REP_DB=TREMBL Accession /GB=C58495 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171576 NCBI Caenorhabditis elegans Y39B6A.31 (Y39B6A.31) mRNA, complete cds. 11/11 None
Y39B6A.31 ENSEMBL cdna:known chromosome:CEL140:V:19011127:19016426:1 gene:Y39B6A.31 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19015482-19016416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.31
Entrez Gene 180247 Entrez gene
SwissProt Q9NEU6 EMBL-EBI
WormBase CE21689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51049 Hypothetical protein Y39B6A.31 [Caenorhabditis elegans] ref|NP_741666.1| Y39B6A.31 [Caenorhabditis elegans] 0.0
blast CAE56251 Hypothetical protein CBG23892 [Caenorhabditis briggsae] 2.0E-64
blast NP_495393 F31E8.5 [Caenorhabditis elegans] gb|AAA98022.2| Hypothetical protein F31E8.5 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:174244_AT
gcacttccatattgagttcttcaatttgaaatcaatggctcagaacaatttcaatgttca
tttgattaaggcagcaaaatgtgaggctaatattacaccggccagtcaaacatcccgtct
ggcgtcagccaatccatcagaacccaacagcctgcaattcactgagtgtacccgaacgat
tctgcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTTCCATATTGAGTTCTTCAAT 581 315 62 Antisense
AATCAATGGCTCAGAACAATTTCAA 452 171 91 Antisense
AATGTTCATTTGATTAAGGCAGCAA 409 163 114 Antisense
GAGGCTAATATTACACCGGCCAGTC 579 405 144 Antisense
ATATTACACCGGCCAGTCAAACATC 236 19 151 Antisense
GCCAGTCAAACATCCCGTCTGGCGT 146 275 162 Antisense
TCTGGCGTCAGCCAATCCATCAGAA 598 607 179 Antisense
ATCAGAACCCAACAGCCTGCAATTC 313 27 197 Antisense
ACAGCCTGCAATTCACTGAGTGTAC 98 109 208 Antisense
TCACTGAGTGTACCCGAACGATTCT 292 627 220 Antisense
GTGTACCCGAACGATTCTGCAAAAT 199 487 227 Antisense
Sequence Source Affymetrix Proprietary Database