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[174241_at]

Description C53363_rc /REP_DB=TREMBL Accession /GB=C53363 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk259c6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_total > 17      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 386.6
(3)
P 		159.1
(-1.7)
P 		95.2
(-3)
P 		191.5
(-1)
P 		291
B 427.8
(3)
P 		85.2
(-2.5)
P 		52.7
(-3)
P 		274.7
(0.6)
P 		375
C 368.6
(3)
P 		138.1
(-1.4)
P 		56.2
(-3)
P 		244.1
(0.6)
P 		312
avr 394.3
(3) 		127.5
(-1.9) 		68
(-3) 		236.8
(0.1) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 352.5
(3)
P 		141.4
(-1.8)
P 		110.4
(-2.5)
P 		88
(-3)
P 		96.5
(-2.8)
P 		133.2
(-2)
P 		265
B 240.6
(3)
P 		193.7
(1.3)
P 		135.5
(-0.9)
P 		105.7
(-2)
P 		79.2
(-3)
P 		101.7
(-2.2)
P 		161
C 233
(3)
P 		198.3
(1.8)
P 		132.3
(-0.6)
P 		66
(-3)
A 		84.7
(-2.3)
P 		83.3
(-2.4)
P 		167
avr 275.4
(3) 		177.8
(-0.1) 		126.1
(-1.7) 		86.6
(-3) 		86.8
(-3) 		106.1
(-2.4) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 140.8
(3)
P 		34.5
(-2.5)
P 		24.9
(-3)
P 		28
(-2.8)
P 		116
B 136.4
(3)
P 		21
(-2.6)
P 		12.2
(-3)
P 		58.5
(-0.8)
P 		124
C 122
(3)
P 		39.7
(-1.8)
P 		19.6
(-3)
P 		41.2
(-1.7)
P 		102
avr 133.1
(3) 		31.7
(-2.3) 		18.9
(-3) 		42.6
(-1.8) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 65
(3)
P 		50.3
(0.9)
P 		24
(-2.8)
P 		22.3
(-3)
P 		29.1
(-2)
P 		32.4
(-1.6)
P 		43
B 83.7
(3)
P 		64.5
(0.9)
P 		32.9
(-2.5)
P 		28
(-3)
P 		32.2
(-2.5)
P 		37.9
(-1.9)
P 		56
C 86.4
(3)
P 		60.5
(0.9)
P 		33.7
(-1.3)
P 		13.3
(-3)
A 		27.4
(-1.8)
P 		27.9
(-1.8)
P 		73
avr 78.4
(3) 		58.4
(0.9) 		30.2
(-2.1) 		21.2
(-3) 		29.6
(-2.1) 		32.7
(-1.8) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22249
Sequence Type Exemplar sequence
Representative Public ID C53363 NCBI
Target Description C53363_rc /REP_DB=TREMBL Accession /GB=C53363 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk259c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171959(11), NM_171728(9), NM_171729(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171959 NCBI Caenorhabditis elegans F48E3.8a (F48E3.8) mRNA, complete cds. 11/11 None
NM_171728 NCBI Caenorhabditis elegans F48E3.8b (F48E3.8) mRNA, complete cds. 9/11 None
NM_171729 NCBI Caenorhabditis elegans F48E3.8c (F48E3.8) mRNA, complete cds. 9/11 None
SNAP00000040275 ENSEMBL cdna:SNAP chromosome:CEL140:X:7507955:7509280:-1 9/11 None
GENEFINDER00000040282 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7507955:7509280:-1 9/11 None
F48E3.8a ENSEMBL cdna:known chromosome:CEL140:X:7507881:7517638:-1 gene:F48E3.8 11/11 None
F48E3.8b ENSEMBL cdna:known chromosome:CEL140:X:7507955:7517638:-1 gene:F48E3.8 9/11 None
F48E3.8c ENSEMBL cdna:known chromosome:CEL140:X:7507955:7509455:-1 gene:F48E3.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7507889-7508225(-) 100.0 100.0
Public Domain and Genome References
Ensembl F48E3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69112 Hypothetical protein F48E3.8a [Caenorhabditis elegans] ref|NP_741840.1| F48E3.8a [Caenorhabditis elegans] 0.0
blast T34264 hypothetical protein F46C8.4 - Caenorhabditis elegans 0.0
blast CAE70228 Hypothetical protein CBG16715 [Caenorhabditis briggsae] 0.0
blast AAM69113 Hypothetical protein F48E3.8b [Caenorhabditis elegans] ref|NP_741839.1| F48E3.8b [Caenorhabditis elegans] 0.0
blast AAM69114 Hypothetical protein F48E3.8c [Caenorhabditis elegans] ref|NP_741841.1| F48E3.8c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 4.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.2E-18
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.4E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-13
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.0E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.8E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.9E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Sequence
Target Sequence 
>C. ELEGANS:174241_AT
tgcgttcgtggcagtgcaaacctcaaatgaaagatgaagctaacccatgcgagaatccta
cgacgtgcagtttcagtggaagagcgagaggacaatttgcgcatagtttccgaatgtgtg
gcgtttgtcccaaatcttatccttggatttaatgttttctttgacattacaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTTCGTGGCAGTGCAAACCTCA 161 583 87 Antisense
GTGGCAGTGCAAACCTCAAATGAAA 113 491 94 Antisense
GAAAGATGAAGCTAACCCATGCGAG 66 361 115 Antisense
AGCTAACCCATGCGAGAATCCTACG 149 79 124 Antisense
ACCCATGCGAGAATCCTACGACGTG 47 91 129 Antisense
GCATAGTTTCCGAATGTGTGGCGTT 290 309 187 Antisense
GAATGTGTGGCGTTTGTCCCAAATC 237 333 198 Antisense
TGGCGTTTGTCCCAAATCTTATCCT 75 543 205 Antisense
GTTTGTCCCAAATCTTATCCTTGGA 155 451 209 Antisense
TATCCTTGGATTTAATGTTTTCTTT 487 651 224 Antisense
ATGTTTTCTTTGACATTACAATTTT 423 47 238 Antisense
Sequence Source Affymetrix Proprietary Database