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[174240_at]

Description CEK09C4R_rc /REP_DB=TREMBL Accession /GB=D27414 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 11      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 15      6grp_total > 13      4grp_total > 57      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11326
1 2 3 4 range
A 385.7
(-2.9)
P 		5697.9
(-0.1)
P 		11409.4
(3)
P 		274.1
(-3)
P 		11135
B 367.9
(-3)
P 		9387.5
(1.8)
P 		11599.6
(3)
P 		415.8
(-3)
P 		11232
C 419.3
(-3)
P 		9664.9
(2.4)
P 		10648.2
(3)
P 		569.8
(-2.9)
P 		10229
avr 391
(-3) 		8250.1
(1.4) 		11219.1
(3) 		419.9
(-3) 		10828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5643
1 2 3 4 5 6 range
A 5951.7
(2.9)
P 		6033.7
(3)
P 		5338.7
(1.8)
P 		4404.8
(0.2)
P 		5700.5
(2.4)
P 		2592.3
(-3)
P 		3441
B 8235
(3)
P 		7160.5
(1.8)
P 		7023.5
(1.6)
P 		7248.6
(1.9)
P 		4315.7
(-1.5)
P 		3055.1
(-3)
P 		5180
C 6746.3
(2.3)
P 		7194.1
(3)
P 		5204
(-0.2)
P 		5410.9
(0.1)
P 		3454.2
(-3)
P 		3481.1
(-3)
P 		3740
avr 6977.7
(3) 		6796.1
(2.7) 		5855.4
(1.3) 		5688.1
(1) 		4490.1
(-0.8) 		3042.8
(-3) 		3935
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3671
1 2 3 4 range
A 140.4
(-2.8)
P 		1236.9
(-0.6)
P 		2982.7
(3)
P 		40.1
(-3)
P 		2943
B 117.3
(-2.9)
P 		2318.5
(2.1)
P 		2687.9
(3)
P 		88.6
(-3)
P 		2599
C 138.8
(-2.9)
P 		2778.7
(1.5)
P 		3711.2
(3)
P 		96.1
(-3)
P 		3615
avr 132.2
(-2.9) 		2111.4
(1) 		3127.3
(3) 		74.9
(-3) 		3052

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2234
1 2 3 4 5 6 range
A 1097.1
(-1.2)
P 		2145.9
(3)
P 		1162.6
(-0.9)
P 		1117.2
(-1.1)
P 		1720.2
(1.3)
P 		631.1
(-3)
P 		1515
B 2865.4
(3)
P 		2383.4
(1.3)
P 		1705.5
(-1)
P 		1919.9
(-0.3)
P 		1753.4
(-0.9)
P 		1139.2
(-3)
P 		1726
C 2500.6
(3)
P 		2195.1
(1.7)
P 		1324.5
(-2)
P 		1088.1
(-3)
P 		1117.7
(-2.9)
P 		1165.3
(-2.7)
P 		1413
avr 2154.4
(2.6) 		2241.5
(3) 		1397.5
(-1) 		1375.1
(-1.1) 		1530.4
(-0.4) 		978.5
(-3) 		1263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20343
Sequence Type Exemplar sequence
Representative Public ID CEK09C4R NCBI
Target Description CEK09C4R_rc /REP_DB=TREMBL Accession /GB=D27414 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170870 NCBI Caenorhabditis elegans C34G6.6a (C34G6.6) mRNA, complete cds. 11/11 None
C34G6.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:5882309:5887090:-1 gene:C34G6.6 11/11 A 
C34G6.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:5882558:5887090:-1 gene:C34G6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172261 2 1 NM_170870 174240_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5882566-5882979(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34G6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52479 Hypothetical protein C34G6.6a [Caenorhabditis elegans] ref|NP_740858.1| C34G6.6a [Caenorhabditis elegans] 0.0
blast AAM15558 Hypothetical protein C34G6.6b [Caenorhabditis elegans] ref|NP_740859.1| C34G6.6b [Caenorhabditis elegans] 0.0
blast CAE60409 Hypothetical protein CBG04015 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.5E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-28
Pfam IPR003014 EMBL-EBI N/apple PAN 4.0E-30
Pfam IPR003014 EMBL-EBI N/apple PAN 6.5E-31
Pfam IPR003014 EMBL-EBI N/apple PAN 6.9E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740858.1 1 1034-1056
C34G6.6a.1 1 1034-1056
C34G6.6a.2 1 1034-1056
Sequence
Target Sequence 
>C. ELEGANS:174240_AT
acagcagttttacgtgtcttcacctcaaaagtttttacctttccttcccctattgaaacc
aaaaaagatccctttttcaactatctctttctaagaaaaatattagtcgaatcgtatgga
atctaataagaagcttctctcatagcaaattctaaatataaatatttttgaatgaagctt
ttttaaaattagattcccagcgatttcggtcttaatttcagctacagtatccactgaaaa
cacatacatttctcaacaaaaaaatctgtttggtctgtcgggtactgtagaaccattcat
ttctcagttacaattatttttattttttctttctatcatgttgacaatttctcccacatc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCAGTTTTACGTGTCTTCACCT 387 109 35 Antisense
TACGTGTCTTCACCTCAAAAGTTTT 409 645 45 Antisense
AAGATCCCTTTTTCAACTATCTCTT 599 155 99 Antisense
GAAGCTTCTCTCATAGCAAATTCTA 136 343 164 Antisense
GATTCCCAGCGATTTCGGTCTTAAT 240 433 226 Antisense
GGTCTTAATTTCAGCTACAGTATCC 633 495 242 Antisense
AAAACACATACATTTCTCAACAAAA 640 129 271 Antisense
AAATCTGTTTGGTCTGTCGGGTACT 653 113 296 Antisense
GGTCTGTCGGGTACTGTAGAACCAT 339 501 306 Antisense
GAACCATTCATTTCTCAGTTACAAT 598 345 324 Antisense
CATGTTGACAATTTCTCCCACATCT 665 209 371 Antisense
Sequence Source Affymetrix Proprietary Database