[Home] | [Total List]

[174239_at]

Description C52111_rc /REP_DB=TREMBL Accession /GB=C52111 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk238b3 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 5.2
(-3)
A 		8.5
(-2.5)
A 		6.5
(-2.8)
A 		45.7
(3)
A 		41
B 6.2
(-2.7)
A 		17.9
(0.1)
A 		4.9
(-3)
A 		30.2
(3)
P 		25
C 12.9
(-3)
A 		13.1
(-2.9)
A 		22.8
(3)
A 		19.5
(1)
A 		10
avr 8.1
(-3) 		13.2
(-1.7) 		11.4
(-2.2) 		31.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 6.3
(-3)
A 		35.3
(-1.3)
P 		32.1
(-1.5)
P 		5.5
(-3)
A 		77.4
(1)
P 		112.1
(3)
P 		107
B 23.6
(-1.7)
A 		3.8
(-3)
A 		6.6
(-2.8)
A 		19.6
(-1.9)
A 		38.8
(-0.6)
A 		92.6
(3)
P 		89
C 10
(-2.8)
A 		7.3
(-3)
A 		6.3
(-3)
A 		31
(-1.8)
A 		75.2
(0.3)
P 		130.4
(3)
P 		124
avr 13.3
(-3) 		15.5
(-2.9) 		15
(-2.9) 		18.7
(-2.7) 		63.8
(0.1) 		111.7
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.9
(-2.8)
A 		1.9
(-2.8)
A 		1.7
(-3)
A 		6.7
(3)
A 		5
B 2
(-2)
A 		4.4
(0.7)
A 		1.1
(-3)
A 		6.4
(3)
P 		5
C 4.3
(-1.7)
A 		3.8
(-2.4)
A 		8
(3)
A 		3.3
(-3)
A 		5
avr 2.7
(-3) 		3.4
(-1.5) 		3.6
(-1.1) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 1.2
(-3)
A 		12.5
(-0.4)
P 		7
(-1.7)
P 		1.4
(-3)
A 		23.3
(2.1)
P 		27.3
(3)
P 		26
B 8.2
(-1.8)
A 		1.3
(-3)
A 		1.6
(-2.9)
A 		5.2
(-2.3)
A 		15.8
(-0.4)
A 		34.5
(3)
P 		33
C 3.7
(-2.7)
A 		2.2
(-2.9)
A 		1.6
(-3)
A 		6.2
(-2.3)
A 		24.3
(0.2)
P 		43.7
(3)
P 		42
avr 4.4
(-2.8) 		5.3
(-2.6) 		3.4
(-3) 		4.3
(-2.8) 		21.1
(0.3) 		35.2
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22360
Sequence Type Exemplar sequence
Representative Public ID C52111 NCBI
Target Description C52111_rc /REP_DB=TREMBL Accession /GB=C52111 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk238b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C27C12.3 ENSEMBL cdna:known chromosome:CEL140:X:14863595:14865761:-1 gene:C27C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14863604-14863884(-) 91.43 100.0
Public Domain and Genome References
Ensembl C27C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 0.0
blast CAA93748 Hypothetical protein F31F6.1 [Caenorhabditis elegans] ref|NP_510468.1| F31F6.1 [Caenorhabditis elegans] 1.0E-100
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:174239_AT
ctgaacttccggtttctgtcatatagatacaccttaattccccgtacacctagtttcccc
cagttgctattgttagttaaattttgctgctctagttatttagaatagtattacctctcc
aaacttttgtatttgactagttttataagaaattattgaatgactaaacattgcctgtta
ataatacttgaagatctcccggatagattagctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAACTTCCGGTTTCTGTCATATA 308 237 36 Antisense
GGTTTCTGTCATATAGATACACCTT 401 505 46 Antisense
TATAGATACACCTTAATTCCCCGTA 241 651 57 Antisense
TTCCCCCAGTTGCTATTGTTAGTTA 436 695 90 Antisense
GTTAAATTTTGCTGCTCTAGTTATT 502 445 111 Antisense
GAATAGTATTACCTCTCCAAACTTT 395 325 138 Antisense
TACCTCTCCAAACTTTTGTATTTGA 2 651 147 Antisense
GAATGACTAAACATTGCCTGTTAAT 266 329 193 Antisense
AACATTGCCTGTTAATAATACTTGA 93 139 202 Antisense
ATAATACTTGAAGATCTCCCGGATA 230 25 216 Antisense
AGATCTCCCGGATAGATTAGCTCCC 182 67 227 Antisense
Sequence Source Affymetrix Proprietary Database