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[174238_at]

Description C53917_rc /REP_DB=TREMBL Accession /GB=C53917 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk317g1 : 3prime end, single read.
Cluster 6grp_total > 16      4grp_total > 55      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 113.8
(3)
P 		34.2
(-1.6)
A 		32.7
(-1.6)
A 		9
(-3)
A 		105
B 140.8
(3)
P 		51.1
(-0.9)
A 		29.7
(-1.9)
A 		4.2
(-3)
A 		137
C 77.5
(3)
P 		31.3
(-3)
A 		40.8
(-1.8)
A 		43.8
(-1.4)
P 		46
avr 110.7
(3) 		38.9
(-1.7) 		34.4
(-2) 		19
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 44.7
(3)
A 		31.1
(-0.4)
P 		21.8
(-2.7)
A 		32.9
(0.1)
A 		20.6
(-3)
A 		20.4
(-3)
A 		24
B 59.6
(1.6)
P 		76.5
(3)
A 		13.6
(-2.2)
A 		26.5
(-1.1)
A 		3.6
(-3)
A 		8.6
(-2.6)
A 		73
C 97.7
(3)
P 		19
(-1.9)
A 		19.3
(-1.9)
A 		1.9
(-3)
A 		1.4
(-3)
A 		6.3
(-2.7)
A 		96
avr 67.3
(3) 		42.2
(0.4) 		18.2
(-2) 		20.4
(-1.8) 		8.5
(-3) 		11.8
(-2.7) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 41.4
(3)
P 		7.4
(-2.1)
A 		8.5
(-1.9)
A 		1.3
(-3)
A 		40
B 44.9
(3)
P 		12.6
(-1.4)
A 		6.9
(-2.2)
A 		0.9
(-3)
A 		44
C 25.6
(3)
P 		9
(-2.5)
A 		14.2
(-0.8)
A 		7.4
(-3)
P 		18
avr 37.3
(3) 		9.7
(-1.9) 		9.9
(-1.8) 		3.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8.2
(0.2)
A 		11.1
(3)
P 		4.8
(-3)
A 		8.3
(0.3)
A 		6.2
(-1.7)
A 		5
(-2.8)
A 		6
B 20.8
(1.8)
P 		25.5
(3)
A 		3.3
(-2.6)
A 		7
(-1.6)
A 		1.5
(-3)
A 		3.2
(-2.6)
A 		24
C 36.2
(3)
P 		5.8
(-2.1)
A 		4.9
(-2.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.1
(-2.7)
A 		36
avr 21.7
(3) 		14.1
(0.6) 		4.3
(-2.5) 		5.2
(-2.2) 		2.7
(-3) 		3.4
(-2.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21282
Sequence Type Exemplar sequence
Representative Public ID C53917 NCBI
Target Description C53917_rc /REP_DB=TREMBL Accession /GB=C53917 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk317g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C18F3.2 ENSEMBL cdna:known chromosome:CEL140:IV:8066903:8083943:1 gene:C18F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8083659-8083939(+) 100.0 100.0
Public Domain and Genome References
Ensembl C18F3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93439 Sensory axon guidance protein 7, isoform a [Caenorhabditis elegans] ref|NP_501349.2| Sensory AXon guidance family member (sax-7) [Caenorhabditis elegans] 0.0
blast AAZ32801 Sensory axon guidance protein 7, isoform d [Caenorhabditis elegans] dbj|BAD97389.1| SAX-7 SHORTFORM [Caenorhabditis elegans] 0.0
blast AAY86218 Sensory axon guidance protein 7, isoform b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.8E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0034
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
C18F3.2 1 1030-1052
Sequence
Target Sequence 
>C. ELEGANS:174238_AT
tacttttttgtgaactttcagttcatgttttgtatttccaaattcatcacattgacgttt
gccagagcttttaccaaagaaaaaccacattaactaagtaagccttatcatgtttcaaac
ataggttttagtcttagacttatagagttagattcgaggataagctctggtaggagtaat
gcaaaattaaattaatacaagaattcaaaacactcttcttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTTTTGTGAACTTTCAGTTCA 560 643 13 Antisense
TTCAGTTCATGTTTTGTATTTCCAA 135 689 29 Antisense
TTGTATTTCCAAATTCATCACATTG 381 705 42 Antisense
TCATCACATTGACGTTTGCCAGAGC 114 621 56 Antisense
TGACGTTTGCCAGAGCTTTTACCAA 137 571 65 Antisense
AAGTAAGCCTTATCATGTTTCAAAC 272 151 108 Antisense
CAAACATAGGTTTTAGTCTTAGACT 457 189 128 Antisense
GACTTATAGAGTTAGATTCGAGGAT 172 371 149 Antisense
GATTCGAGGATAAGCTCTGGTAGGA 268 433 163 Antisense
GATAAGCTCTGGTAGGAGTAATGCA 393 423 171 Antisense
AGAATTCAAAACACTCTTCTTCTGA 537 75 212 Antisense
Sequence Source Affymetrix Proprietary Database