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[174237_at]

Description C56324_rc /REP_DB=TREMBL Accession /GB=C56324 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk252b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 74      6grp_total > 39      4grp_total > 53      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 498.4
(2.1)
P 		541.6
(3)
P 		426.5
(0.5)
P 		263
(-3)
P 		279
B 622.5
(3)
P 		562.1
(1.5)
P 		427.4
(-1.8)
P 		379.9
(-3)
P 		243
C 675
(3)
P 		494.3
(-0.6)
P 		439.1
(-1.7)
P 		373.4
(-3)
P 		302
avr 598.6
(3) 		532.7
(1.5) 		431
(-0.9) 		338.8
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 923.6
(3)
P 		724.3
(-0.1)
P 		536.8
(-3)
P 		630.9
(-1.5)
P 		816.5
(1.3)
P 		773.2
(0.7)
P 		387
B 595.1
(-0.7)
P 		715.4
(1.5)
P 		469.8
(-3)
P 		522.7
(-2)
P 		797.5
(3)
P 		685.7
(1)
P 		328
C 684.6
(-0.8)
P 		662.9
(-1.1)
P 		516.3
(-3)
P 		519
(-3)
P 		981.1
(3)
P 		652.9
(-1.2)
P 		465
avr 734.4
(0.8) 		700.9
(0.2) 		507.6
(-3) 		557.5
(-2.2) 		865
(3) 		703.9
(0.3) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 181.5
(3)
P 		117.6
(0.3)
P 		111.5
(0.1)
P 		38.5
(-3)
P 		143
B 198.5
(3)
P 		138.8
(-0)
P 		99
(-2.1)
P 		81
(-3)
P 		118
C 223.4
(3)
P 		142.1
(-0)
P 		153
(0.4)
P 		63
(-3)
P 		160
avr 201.1
(3) 		132.8
(0.1) 		121.2
(-0.4) 		60.8
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 170.3
(-0.7)
P 		257.6
(3)
P 		116.9
(-3)
P 		160
(-1.2)
P 		246.4
(2.5)
P 		188.2
(0)
P 		141
B 207.1
(-0.3)
P 		238.1
(0.5)
P 		114.1
(-3)
P 		138.4
(-2.3)
P 		324
(3)
P 		255.7
(1)
P 		210
C 253.7
(1.2)
P 		202.3
(-0.2)
P 		131.4
(-2.2)
P 		104.4
(-3)
P 		317.5
(3)
P 		218.6
(0.2)
P 		213
avr 210.4
(0.1) 		232.7
(0.8) 		120.8
(-3) 		134.3
(-2.5) 		296
(3) 		220.8
(0.4) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21735
Sequence Type Exemplar sequence
Representative Public ID C56324 NCBI
Target Description C56324_rc /REP_DB=TREMBL Accession /GB=C56324 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk252b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y49G5B.1 ENSEMBL cdna:known chromosome:CEL140:V:5226818:5230292:1 gene:Y49G5B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5229932-5230212(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y49G5B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14759 Hypothetical protein Y49G5B.1 [Caenorhabditis elegans] ref|NP_504396.1| Y49G5B.1 [Caenorhabditis elegans] 1.0E-163
blast CAE64097 Hypothetical protein CBG08704 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:174237_AT
gttcattctccaatatgtataccgtgtgatccaagatctccccgtcatattatcgacgct
gctgctctagtatgattcctagtgcttcctgccgtagttaccatctagaatcgcctctct
ctgtataaactttgattcaccaccaccccgatttgccagagccataatcttcccagttat
actatcatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATTCTCCAATATGTATACCGT 119 445 17 Antisense
ATACCGTGTGATCCAAGATCTCCCC 194 21 35 Antisense
GATCTCCCCGTCATATTATCGACGC 209 419 51 Antisense
TATCGACGCTGCTGCTCTAGTATGA 435 655 67 Antisense
TAGTATGATTCCTAGTGCTTCCTGC 683 653 84 Antisense
TTCCTGCCGTAGTTACCATCTAGAA 643 697 102 Antisense
TAGTTACCATCTAGAATCGCCTCTC 202 653 111 Antisense
TCGCCTCTCTCTGTATAAACTTTGA 273 599 127 Antisense
TATAAACTTTGATTCACCACCACCC 265 661 140 Antisense
ATTTGCCAGAGCCATAATCTTCCCA 321 17 167 Antisense
ATCTTCCCAGTTATACTATCATCCA 440 31 183 Antisense
Sequence Source Affymetrix Proprietary Database