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[174234_at]

Description C56695_rc /REP_DB=TREMBL Accession /GB=C56695 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk276d6 : 3prime end, single read.
Cluster 6grp_total > 39      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 8.2
(-2.6)
A 		7.8
(-2.6)
A 		3.3
(-3)
A 		78.5
(3)
A 		75
B 41.2
(1.4)
A 		10.3
(-2.9)
A 		9.6
(-3)
A 		52.7
(3)
A 		43
C 27.4
(-1.2)
A 		5.3
(-3)
A 		9.6
(-2.6)
A 		77.2
(3)
P 		72
avr 25.6
(-1.2) 		7.8
(-3) 		7.5
(-3) 		69.5
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 10.3
(-1.9)
A 		34.6
(1.4)
A 		26.4
(0.3)
A 		2.5
(-3)
A 		46.2
(3)
A 		20
(-0.6)
A 		44
B 18.6
(-0.5)
A 		24.6
(0.6)
A 		8.3
(-2.5)
A 		5.5
(-3)
A 		30.7
(1.8)
A 		37.2
(3)
A 		32
C 40.5
(3)
A 		9.7
(-2.5)
A 		11.2
(-2.3)
A 		15.9
(-1.4)
A 		18.7
(-0.9)
A 		7.2
(-3)
A 		33
avr 23.1
(0.8) 		23
(0.8) 		15.3
(-1.2) 		8
(-3) 		31.9
(3) 		21.5
(0.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-1.8)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		11.5
(3)
A 		11
B 13.1
(3)
A 		2.5
(-2.8)
A 		2.2
(-3)
A 		11.2
(2)
A 		11
C 9.1
(1)
A 		1.5
(-3)
A 		3.3
(-2.1)
A 		13
(3)
P 		12
avr 8.4
(0.9) 		1.9
(-3) 		2.1
(-2.9) 		11.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.9
(-2.4)
A 		12.3
(2.2)
A 		5.7
(-0.7)
A 		0.6
(-3)
A 		14
(3)
A 		4.9
(-1.1)
A 		13
B 6.5
(-0.6)
A 		8.2
(0.3)
A 		2
(-2.7)
A 		1.4
(-3)
A 		12.5
(2.3)
A 		13.9
(3)
A 		13
C 15
(3)
A 		2.9
(-2.8)
A 		2.9
(-2.8)
A 		3.2
(-2.6)
A 		6
(-1.3)
A 		2.4
(-3)
A 		13
avr 7.8
(1) 		7.8
(1) 		3.5
(-1.8) 		1.7
(-3) 		10.8
(3) 		7.1
(0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21860
Sequence Type Exemplar sequence
Representative Public ID C56695 NCBI
Target Description C56695_rc /REP_DB=TREMBL Accession /GB=C56695 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk276d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56695
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56695 C56695_rc /REP_DB=TREMBL Accession /GB=C56695 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk276d6 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16610754-16611034(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174234_AT
tgtttttataattcgccactttgattttgcgttttccacttttcaaggcatcctgaaggg
tcgacccatcgacccatcgtaaaaaacctatgaggcgataggcggggcgaggcgtaacta
cgtcgcctatgtggatgcttggctcaaatatcgaaaaaggttatgtctcctttatttttt
tattgagaattgagtcgtccagagaatatttcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTTATAATTCGCCACTTTGAT 488 559 13 Antisense
CACTTTGATTTTGCGTTTTCCACTT 698 195 29 Antisense
TTTTCCACTTTTCAAGGCATCCTGA 266 675 44 Antisense
GCATCCTGAAGGGTCGACCCATCGA 708 305 60 Antisense
ATCGACCCATCGTAAAAAACCTATG 305 31 80 Antisense
TATGAGGCGATAGGCGGGGCGAGGC 9 653 101 Antisense
GGGGCGAGGCGTAACTACGTCGCCT 6 319 116 Antisense
AACTACGTCGCCTATGTGGATGCTT 616 139 128 Antisense
GTGGATGCTTGGCTCAAATATCGAA 198 491 143 Antisense
TTATGTCTCCTTTATTTTTTTATTG 351 681 173 Antisense
TGAGTCGTCCAGAGAATATTTCGTT 123 565 203 Antisense
Sequence Source Affymetrix Proprietary Database