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[174233_at]

Description C34360_rc /REP_DB=TREMBL Accession /GB=C34360 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk400c3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 58      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_total > 69      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 145.9
(1.1)
P 		102.4
(-0.9)
P 		58.4
(-3)
P 		186.6
(3)
P 		128
B 140.4
(2.4)
P 		91.6
(-3)
P 		102.6
(-1.8)
P 		145.5
(3)
P 		54
C 184.9
(1.6)
P 		112.7
(-1.3)
P 		69.3
(-3)
P 		218.8
(3)
P 		150
avr 157.1
(1.5) 		102.2
(-1.6) 		76.8
(-3) 		183.6
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 101.9
(0.5)
P 		92.3
(-0.6)
P 		70.5
(-3)
P 		86.8
(-1.2)
P 		111.3
(1.5)
P 		125.1
(3)
P 		55
B 187.8
(1.1)
P 		99.7
(-1.7)
P 		81.8
(-2.3)
P 		59.9
(-3)
P 		113.8
(-1.3)
P 		247.4
(3)
P 		188
C 158
(-0.1)
P 		90.6
(-1.9)
P 		94.1
(-1.8)
P 		50.8
(-3)
M 		131.2
(-0.8)
P 		274.5
(3)
P 		224
avr 149.2
(0.3) 		94.2
(-1.9) 		82.1
(-2.3) 		65.8
(-3) 		118.8
(-0.9) 		215.7
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 53.1
(3)
P 		22.2
(-1.9)
P 		15.3
(-3)
P 		27.3
(-1.1)
P 		38
B 44.8
(3)
P 		22.6
(-3)
P 		23.8
(-2.7)
P 		31
(-0.7)
P 		22
C 61.2
(3)
P 		32.4
(-1.7)
P 		24.1
(-3)
P 		36.9
(-0.9)
P 		37
avr 53
(3) 		25.7
(-2.1) 		21.1
(-3) 		31.7
(-1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 18.8
(-1.9)
P 		32.8
(2.7)
P 		15.4
(-3)
P 		22
(-0.8)
P 		33.6
(3)
P 		30.4
(1.9)
P 		18
B 65.4
(0.9)
P 		33.2
(-1.6)
P 		19.9
(-2.7)
P 		15.9
(-3)
P 		46.2
(-0.6)
P 		92.3
(3)
P 		76
C 58.6
(0.6)
P 		27.6
(-1.7)
P 		24
(-2)
P 		10.2
(-3)
M 		42.5
(-0.6)
P 		91.9
(3)
P 		82
avr 47.6
(0.4) 		31.2
(-1.4) 		19.8
(-2.6) 		16
(-3) 		40.8
(-0.3) 		71.5
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22359
Sequence Type Exemplar sequence
Representative Public ID C34360 NCBI
Target Description C34360_rc /REP_DB=TREMBL Accession /GB=C34360 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk400c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078376 NCBI Caenorhabditis elegans T23C6.4 (T23C6.4) mRNA, complete cds. 11/11 A 
T23C6.4 ENSEMBL cdna:known chromosome:CEL140:X:17147498:17149829:-1 gene:T23C6.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033354 4/11 Cross Hyb Matching Probes None
GENEFINDER00000033358 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17147507-17147818(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23C6.4
Entrez Gene 181754 Entrez gene
SwissProt O02040 EMBL-EBI
WormBase CE07529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52883 Hypothetical protein T23C6.4 [Caenorhabditis elegans] ref|NP_510777.1| T23C6.4 [Caenorhabditis elegans] 1.0E-154
blast CAE69699 Hypothetical protein CBG15956 [Caenorhabditis briggsae] 4.0E-36
Sequence
Target Sequence 
>C. ELEGANS:174233_AT
caatggaaatcgtggcggtcggcgtcgtagcaacaacaactggaacaacagtaatcgcgg
caacaatggattctggaccggagagtacaagaataatcaaacatcctggaagacagatca
ataatcaataatctgagtgattgacattgttgattctgtaaattcgtcttgcgagttgtt
ttccaaaccgtgtttctgcttcattttgtcatttttaacactttttttttcatctaaaag
tatgcttgatttttattcagtaatcactagccaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGGAAATCGTGGCGGTCGGCGT 20 163 16 Antisense
GGAACAACAGTAATCGCGGCAACAA 201 529 57 Antisense
GGCAACAATGGATTCTGGACCGGAG 709 533 74 Antisense
GAATAATCAAACATCCTGGAAGACA 561 325 106 Antisense
GAGTGATTGACATTGTTGATTCTGT 505 401 150 Antisense
GTTGATTCTGTAAATTCGTCTTGCG 223 437 164 Antisense
TCGTCTTGCGAGTTGTTTTCCAAAC 696 603 179 Antisense
TTTTCCAAACCGTGTTTCTGCTTCA 290 675 194 Antisense
CGTGTTTCTGCTTCATTTTGTCATT 508 245 204 Antisense
AAGTATGCTTGATTTTTATTCAGTA 552 157 253 Antisense
TATTCAGTAATCACTAGCCAAAGCT 511 661 269 Antisense
Sequence Source Affymetrix Proprietary Database