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[174232_at]

Description C36598_rc /REP_DB=TREMBL Accession /GB=C36598 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk468d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 29      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 307.4
(3)
P 		145.4
(-3)
P 		180.5
(-1.7)
P 		172.4
(-2)
P 		162
B 288
(-0.1)
P 		180.7
(-2.6)
P 		164.4
(-3)
P 		417
(3)
P 		253
C 477.6
(3)
P 		244.6
(-2.5)
P 		221.6
(-3)
P 		282.4
(-1.6)
P 		256
avr 357.7
(3) 		190.2
(-3) 		188.8
(-3) 		290.6
(0.6) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 161.2
(-2.6)
P 		305
(1)
P 		213
(-1.3)
P 		144.7
(-3)
P 		383.5
(3)
P 		212.8
(-1.3)
P 		239
B 550.8
(3)
P 		301.4
(-0.9)
P 		194.7
(-2.5)
P 		228.7
(-2)
P 		292.7
(-1)
P 		165.8
(-3)
P 		385
C 380.8
(3)
P 		276.8
(0.4)
P 		242.3
(-0.5)
P 		238.3
(-0.6)
P 		236.1
(-0.7)
P 		143.7
(-3)
P 		237
avr 364.3
(3) 		294.4
(0.8) 		216.7
(-1.7) 		203.9
(-2.1) 		304.1
(1.1) 		174.1
(-3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 111.9
(3)
P 		31.6
(-2.6)
P 		47.2
(-1.5)
P 		25.2
(-3)
P 		87
B 91.8
(3)
P 		44.6
(-2.3)
P 		38.1
(-3)
P 		88.9
(2.7)
P 		54
C 158.1
(3)
P 		70.3
(-1.8)
P 		77.2
(-1.4)
P 		47.6
(-3)
P 		111
avr 120.6
(3) 		48.8
(-3) 		54.2
(-2.5) 		53.9
(-2.6) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 29.7
(-3)
P 		108.5
(2.5)
P 		46.4
(-1.8)
P 		36.7
(-2.5)
P 		115.7
(3)
P 		51.8
(-1.5)
P 		86
B 191.6
(3)
P 		100.3
(-0.8)
P 		47.3
(-3)
P 		60.6
(-2.4)
P 		118.9
(-0)
P 		61.8
(-2.4)
P 		144
C 141.2
(3)
P 		84.5
(-0.6)
P 		61.7
(-2.1)
P 		47.9
(-3)
P 		76.4
(-1.2)
P 		48.1
(-3)
P 		93
avr 120.8
(3) 		97.8
(1.1) 		51.8
(-2.7) 		48.4
(-3) 		103.7
(1.6) 		53.9
(-2.5) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22097
Sequence Type Exemplar sequence
Representative Public ID C36598 NCBI
Target Description C36598_rc /REP_DB=TREMBL Accession /GB=C36598 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk468d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T06F4.1a ENSEMBL cdna:known chromosome:CEL140:X:4056817:4071467:-1 gene:T06F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4056882-4057161(-) 100.0 100.0
Public Domain and Genome References
Ensembl T06F4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508693 T06F4.1a [Caenorhabditis elegans] gb|AAK71398.1| Hypothetical protein T06F4.1a [Caenorhabditis elegans] 2.0E-91
blast NP_508694 T06F4.1b [Caenorhabditis elegans] gb|AAK71399.1| Hypothetical protein T06F4.1b [Caenorhabditis elegans] 9.0E-82
blast CAE68516 Hypothetical protein CBG14330 [Caenorhabditis briggsae] 4.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T06F4.1a 1 42-64
Sequence
Target Sequence 
>C. ELEGANS:174232_AT
tactctagaattttacctgaagataagcaatagccttccctcctcattctgcacaaatgt
ttgttcctaaaaataagatcccatcaaattatgttctaatgttatacatttgaaagtcca
agcttttgattatttgccgtttcatcttggccccgccgcgggtagcatttatatcccgaa
cacagtttctctctcactcaatgttttaatccgattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCTAGAATTTTACCTGAAGATA 488 645 13 Antisense
GAAGATAAGCAATAGCCTTCCCTCC 88 339 31 Antisense
TGTTCCTAAAAATAAGATCCCATCA 156 561 74 Antisense
AGATCCCATCAAATTATGTTCTAAT 534 65 88 Antisense
GTTATACATTTGAAAGTCCAAGCTT 524 447 113 Antisense
GTCCAAGCTTTTGATTATTTGCCGT 665 475 128 Antisense
ATTATTTGCCGTTTCATCTTGGCCC 609 13 141 Antisense
CCGCCGCGGGTAGCATTTATATCCC 209 261 165 Antisense
TATATCCCGAACACAGTTTCTCTCT 542 659 182 Antisense
GTTTCTCTCTCACTCAATGTTTTAA 227 451 197 Antisense
CACTCAATGTTTTAATCCGATTTTT 565 197 207 Antisense
Sequence Source Affymetrix Proprietary Database