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[174231_at]

Description C53591_rc /REP_DB=TREMBL Accession /GB=C53591 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 844.1
(1)
P 		463.2
(-3)
P 		849.4
(1.1)
P 		1033.3
(3)
P 		570
B 730.7
(-3)
P 		867.9
(-0.7)
P 		771.1
(-2.3)
P 		1084
(3)
P 		353
C 734.5
(-3)
P 		985.7
(2.6)
P 		1003.6
(3)
P 		861.9
(-0.2)
P 		269
avr 769.8
(-3) 		772.3
(-2.9) 		874.7
(-0.2) 		993.1
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 874.4
(-1.6)
P 		879.9
(-1.5)
P 		896.2
(-1.2)
P 		793.4
(-3)
P 		1137.3
(3)
P 		1020.4
(1)
P 		344
B 1043.9
(1.7)
P 		973.3
(1)
P 		541.3
(-3)
P 		1182.3
(3)
P 		974.3
(1.1)
P 		1104.8
(2.3)
P 		641
C 1081
(1.5)
P 		1167.9
(3)
P 		813.8
(-3)
P 		957.6
(-0.6)
P 		898.2
(-1.6)
P 		1128.2
(2.3)
P 		354
avr 999.8
(1.5) 		1007
(1.6) 		750.4
(-3) 		977.8
(1.1) 		1003.3
(1.5) 		1084.5
(3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 307.3
(3)
P 		100.6
(-3)
P 		222
(0.5)
P 		151.3
(-1.5)
P 		207
B 233
(3)
P 		214.3
(0.9)
P 		178.7
(-3)
P 		231
(2.8)
P 		54
C 243.1
(-0.1)
P 		283.4
(1.1)
P 		349.8
(3)
P 		145.3
(-3)
P 		205
avr 261.1
(3) 		199.4
(-1.3) 		250.2
(2.2) 		175.9
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 161.2
(-3)
P 		312.9
(2)
P 		195.2
(-1.9)
P 		201.2
(-1.7)
P 		343.2
(3)
P 		248.4
(-0.1)
P 		182
B 363.2
(2)
P 		324
(1.1)
P 		131.5
(-3)
P 		313.1
(0.9)
P 		395.8
(2.7)
P 		412
(3)
P 		281
C 400.7
(3)
P 		356.4
(1.7)
P 		207.1
(-2.6)
P 		192.6
(-3)
P 		290.6
(-0.2)
P 		377.7
(2.3)
P 		208
avr 308.4
(1.7) 		331.1
(2.5) 		177.9
(-3) 		235.6
(-0.9) 		343.2
(2.9) 		346
(3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21334
Sequence Type Exemplar sequence
Representative Public ID C53591 NCBI
Target Description C53591_rc /REP_DB=TREMBL Accession /GB=C53591 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H34C03.2 ENSEMBL cdna:known chromosome:CEL140:IV:6757295:6762572:1 gene:H34C03.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6762244-6762525(+) 100.0 100.0
Public Domain and Genome References
Ensembl H34C03.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68977 Hypothetical protein H34C03.2 [Caenorhabditis elegans] ref|NP_501035.1| H34C03.2 [Caenorhabditis elegans] 0.0
blast CAE61486 Hypothetical protein CBG05381 [Caenorhabditis briggsae] 0.0
blast NP_192795 ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR010460 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase N terminus 2.5E-64
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174231_AT
gtgtttgtgtgtctctataggttattctacttttaattcgtttctgatgtcgttttaccc
atcctagcctttctttttttaaaatcattttcaacgatttaagcctatgtgcttcccatc
ttaattattaatcagtatgtttcacactgaaccatttttctttttttctcgaaatcccgt
ttgaaaatgtcatgtttagtagtttcctaattctatcaattttatcggattatgtgctac
gttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTTGTGTGTCTCTATAGGTTAT 71 487 13 Antisense
GTGTCTCTATAGGTTATTCTACTTT 667 485 21 Antisense
ATTCTACTTTTAATTCGTTTCTGAT 388 11 36 Antisense
TTCGTTTCTGATGTCGTTTTACCCA 369 695 49 Antisense
CTGATGTCGTTTTACCCATCCTAGC 705 235 56 Antisense
GATTTAAGCCTATGTGCTTCCCATC 327 429 108 Antisense
TGTGCTTCCCATCTTAATTATTAAT 82 555 120 Antisense
TTCACACTGAACCATTTTTCTTTTT 314 687 153 Antisense
AAAATGTCATGTTTAGTAGTTTCCT 65 133 196 Antisense
TAGTAGTTTCCTAATTCTATCAATT 581 653 209 Antisense
TTTATCGGATTATGTGCTACGTTAA 639 673 233 Antisense
Sequence Source Affymetrix Proprietary Database