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[174230_at]

Description C33856_rc /REP_DB=TREMBL Accession /GB=C33856 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk376b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 50      6grp_total > 18      4grp_total > 62      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 456.8
(0.4)
P 		370.3
(-1.8)
P 		556.3
(3)
P 		323.3
(-3)
P 		233
B 529.1
(3)
P 		325.2
(-1.6)
P 		459.1
(1.4)
P 		261.3
(-3)
P 		268
C 611.9
(3)
P 		520.4
(1)
P 		337.4
(-3)
P 		416.2
(-1.3)
P 		275
avr 532.6
(3) 		405.3
(-0.8) 		450.9
(0.5) 		333.6
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 918
1 2 3 4 5 6 range
A 792.9
(3)
P 		616.2
(0.8)
P 		493.3
(-0.8)
P 		319.7
(-3)
P 		610.6
(0.7)
P 		511.7
(-0.6)
P 		473
B 769.6
(3)
P 		440
(-0.5)
P 		210.4
(-3)
P 		492.6
(0)
P 		378.5
(-1.2)
P 		378.2
(-1.2)
P 		559
C 1128.7
(3)
P 		394.9
(-2)
P 		518.3
(-1.2)
P 		335.7
(-2.4)
P 		570.5
(-0.8)
P 		253.7
(-3)
P 		875
avr 897.1
(3) 		483.7
(-1.8) 		407.3
(-2.7) 		382.7
(-3) 		519.9
(-1.4) 		381.2
(-3) 		516
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 166.3
(3)
P 		80.4
(-1.3)
P 		145.4
(1.9)
P 		47.3
(-3)
P 		119
B 168.7
(3)
P 		80.3
(-1.7)
P 		106.4
(-0.3)
P 		55.7
(-3)
P 		113
C 202.6
(3)
P 		149.6
(0.6)
P 		117.6
(-0.9)
P 		70.2
(-3)
P 		132
avr 179.2
(3) 		103.4
(-0.7) 		123.1
(0.2) 		57.7
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 146.2
(-0.2)
P 		219.2
(3)
P 		107.4
(-1.9)
P 		81.1
(-3)
P 		184.2
(1.5)
P 		124.6
(-1.1)
P 		138
B 267.8
(3)
P 		146.5
(-0.4)
P 		51.1
(-3)
P 		130.5
(-0.8)
P 		153.8
(-0.2)
P 		141
(-0.5)
P 		217
C 418.4
(3)
P 		120.5
(-2.1)
P 		131.9
(-1.9)
P 		67.5
(-3)
P 		184.6
(-1)
P 		84.9
(-2.7)
P 		351
avr 277.5
(3) 		162.1
(-0.8) 		96.8
(-2.9) 		93
(-3) 		174.2
(-0.4) 		116.8
(-2.2) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20059
Sequence Type Exemplar sequence
Representative Public ID C33856 NCBI
Target Description C33856_rc /REP_DB=TREMBL Accession /GB=C33856 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk376b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C32E8.10c ENSEMBL cdna:known chromosome:CEL140:I:3798463:3805720:-1 gene:C32E8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3798472-3798857(-) 90.91 100.0
Public Domain and Genome References
Ensembl C32E8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68214 Uncoordinated protein 11, isoform c [Caenorhabditis elegans] ref|NP_491228.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast T25603 hypothetical protein C32E8.10 - Caenorhabditis elegans 0.0
blast AAK68212 Uncoordinated protein 11, isoform a [Caenorhabditis elegans] ref|NP_491227.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37365.1| AP180-like adaptor protein [Caenorhabditis elegans] sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 (AP180-like adaptor protein) (Uncoordinated protein 11) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:174230_AT
tattccagtaaattgcctttttcttcggtcgaattgtcataatttttcatgctctctaga
tacaatgtaccccccaaaattcttcagattcggccaaattttcgtcagatcagtgatgtt
ttccccctatctctatctctgcgtcttccagtctctagcggcattttttgtttcattctt
tccacccaaaaatttattttgcaaaacgcacgcttctgtgtcctatttaattatttgaat
tttatatatttatttattgactccccctcccccccccggctctcccattttaagcgctcg
tgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCAGTAAATTGCCTTTTTCTT 496 661 36 Antisense
GTCATAATTTTTCATGCTCTCTAGA 25 469 71 Antisense
GCTCTCTAGATACAATGTACCCCCC 62 297 86 Antisense
CCCCAAAATTCTTCAGATTCGGCCA 4 261 107 Antisense
TCGGCCAAATTTTCGTCAGATCAGT 141 603 125 Antisense
TTCCAGTCTCTAGCGGCATTTTTTG 250 697 181 Antisense
GCATTTTTTGTTTCATTCTTTCCAC 416 307 196 Antisense
TTGCAAAACGCACGCTTCTGTGTCC 662 701 234 Antisense
CACGCTTCTGTGTCCTATTTAATTA 216 201 244 Antisense
TATATTTATTTATTGACTCCCCCTC 438 661 280 Antisense
CTCCCATTTTAAGCGCTCGTGTTTC 383 223 317 Antisense
Sequence Source Affymetrix Proprietary Database