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[174228_at]

Description C29568_rc /REP_DB=TREMBL Accession /GB=C29568 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk215d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 65.7
(3)
P 		42.3
(-3)
P 		46.5
(-1.9)
P 		44.7
(-2.4)
M 		23
B 56.3
(1.2)
A 		72.3
(3)
A 		19
(-3)
A 		25
(-2.3)
P 		53
C 88
(3)
P 		55.7
(-3)
M 		72.9
(0.2)
P 		63.2
(-1.6)
P 		32
avr 70
(3) 		56.8
(-0.1) 		46.1
(-2.6) 		44.3
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 145.4
(3)
P 		118.7
(1.6)
P 		111
(1.2)
P 		29.4
(-3)
P 		104.5
(0.9)
P 		44.9
(-2.2)
P 		116
B 201.5
(3)
P 		123.9
(0.2)
P 		47.9
(-2.6)
P 		123
(0.1)
P 		84
(-1.3)
P 		38.1
(-3)
P 		163
C 100.9
(1.5)
P 		97.3
(1.1)
P 		118.5
(3)
P 		91.6
(0.6)
P 		76
(-0.7)
P 		50.1
(-3)
P 		68
avr 149.3
(3) 		113.3
(0.9) 		92.5
(-0.2) 		81.3
(-0.9) 		88.2
(-0.5) 		44.4
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 23.9
(3)
P 		9.2
(-2.1)
P 		12.2
(-1)
P 		6.5
(-3)
M 		17
B 17.9
(3)
A 		17.9
(3)
A 		4.4
(-3)
A 		5.3
(-2.6)
P 		14
C 29.1
(3)
P 		16
(-1.3)
M 		25.4
(1.8)
P 		10.7
(-3)
P 		18
avr 23.6
(3) 		14.4
(-0.4) 		14
(-0.6) 		7.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 26.8
(0.3)
P 		42.2
(3)
P 		24.2
(-0.1)
P 		7.5
(-3)
P 		31.5
(1.1)
P 		10.9
(-2.4)
P 		35
B 70.1
(3)
P 		41.2
(0)
P 		11.6
(-3)
P 		32.6
(-0.8)
P 		34.1
(-0.7)
P 		14.2
(-2.7)
P 		59
C 37.4
(3)
P 		29.7
(0.8)
P 		30.2
(0.9)
P 		18.4
(-2.5)
P 		24.6
(-0.7)
P 		16.8
(-3)
P 		21
avr 44.8
(3) 		37.7
(1.6) 		22
(-1.4) 		19.5
(-1.9) 		30.1
(0.1) 		14
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21331
Sequence Type Exemplar sequence
Representative Public ID C29568 NCBI
Target Description C29568_rc /REP_DB=TREMBL Accession /GB=C29568 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk215d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08C7.4 ENSEMBL cdna:known chromosome:CEL140:IV:10679303:10680447:-1 gene:K08C7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10679318-10679603(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08C7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94294 Hypothetical protein K08C7.4 [Caenorhabditis elegans] ref|NP_501971.2| K08C7.4 [Caenorhabditis elegans] 8.0E-72
Sequence
Target Sequence 
>C. ELEGANS:174228_AT
gagaattgcgctaaagtgataacactctgcatatcggctttatgaatactttaattcgta
tgtgcttgaagtataatcaggcaaattaccaaaaacgattgtagaatacctatcccaatg
tgtttttattgaaattggtttttgtgtttagacctagaaaatgaacagttttttttagtt
tggctgtgtttttaaatacgatttttaatcacatgcgccatgttgaaaattagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATTGCGCTAAAGTGATAACAC 19 391 28 Antisense
ATAACACTCTGCATATCGGCTTTAT 51 25 46 Antisense
ATATCGGCTTTATGAATACTTTAAT 340 19 58 Antisense
TACTTTAATTCGTATGTGCTTGAAG 260 645 74 Antisense
TGTGCTTGAAGTATAATCAGGCAAA 255 555 88 Antisense
AACGATTGTAGAATACCTATCCCAA 258 145 121 Antisense
GAATACCTATCCCAATGTGTTTTTA 132 327 131 Antisense
TGAACAGTTTTTTTTAGTTTGGCTG 515 571 189 Antisense
TTGGCTGTGTTTTTAAATACGATTT 406 489 207 Antisense
ACGATTTTTAATCACATGCGCCATG 544 93 225 Antisense
CATGCGCCATGTTGAAAATTAGATT 404 209 239 Antisense
Sequence Source Affymetrix Proprietary Database