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[174227_at]

Description C57696_rc /REP_DB=TREMBL Accession /GB=C57696 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk309f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_high_8_8 > 45      6grp_highest_nonorm > 90      6grp_total > 11      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 71.9
(-2.6)
P 		99.8
(0)
P 		131.7
(3)
P 		67.2
(-3)
A 		65
B 108.4
(-0.4)
P 		152.9
(3)
P 		75.3
(-3)
P 		98.1
(-1.2)
P 		78
C 99.8
(-1.6)
P 		145.6
(3)
P 		143.7
(2.8)
P 		86.4
(-3)
P 		59
avr 93.4
(-1.8) 		132.8
(3) 		116.9
(1) 		83.9
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 93.1
(-0.2)
P 		146.7
(3)
P 		91.1
(-0.3)
P 		87.5
(-0.5)
P 		57.2
(-2.3)
P 		44.7
(-3)
P 		102
B 105
(-0.5)
P 		158.4
(3)
P 		104.8
(-0.5)
P 		69.5
(-2.9)
P 		78.2
(-2.3)
P 		67.4
(-3)
P 		91
C 84.8
(-1.7)
P 		160.2
(3)
P 		129.5
(1.1)
P 		80
(-2)
P 		63.7
(-3)
P 		66.5
(-2.8)
P 		97
avr 94.3
(-0.8) 		155.1
(3) 		108.5
(0.1) 		79
(-1.8) 		66.4
(-2.6) 		59.5
(-3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 26.2
(1)
P 		21.7
(-0.1)
P 		34.4
(3)
P 		9.8
(-3)
A 		25
B 34.6
(2.1)
P 		37.8
(3)
P 		17.4
(-3)
P 		20.9
(-2)
P 		20
C 33
(0.1)
P 		41.9
(1.6)
P 		50.1
(3)
P 		14.6
(-3)
P 		36
avr 31.3
(2.1) 		33.8
(2.9) 		34
(3) 		15.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 17.2
(-2.1)
P 		52.2
(3)
P 		19.8
(-1.7)
P 		22.2
(-1.4)
P 		17.3
(-2.1)
P 		10.9
(-3)
P 		41
B 36.5
(0.2)
P 		52.7
(3)
P 		25.5
(-1.8)
P 		18.4
(-3)
P 		31.8
(-0.7)
P 		25.1
(-1.8)
P 		34
C 31.4
(-0.2)
P 		48.9
(3)
P 		32.9
(0.1)
P 		16.1
(-3)
P 		20.6
(-2.2)
P 		22.3
(-1.9)
P 		33
avr 28.4
(-1.2) 		51.3
(3) 		26.1
(-1.7) 		18.9
(-3) 		23.2
(-2.2) 		19.4
(-2.9) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22068
Sequence Type Exemplar sequence
Representative Public ID C57696 NCBI
Target Description C57696_rc /REP_DB=TREMBL Accession /GB=C57696 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk309f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171704 NCBI Caenorhabditis elegans T07H6.1a (esterase) mRNA, complete cds. 11/11 A 
T07H6.1a ENSEMBL cdna:known chromosome:CEL140:X:6300096:6305103:1 gene:T07H6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171705 8/11 Cross Hyb Matching Probes None
SNAP00000029180 8/11 Cross Hyb Matching Probes None
T07H6.1b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180905 2 1 NM_171704 174227_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6304813-6305093(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07H6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77632 Hypothetical protein T07H6.1a [Caenorhabditis elegans] ref|NP_741812.1| T07H6.1a [Caenorhabditis elegans] 0.0
blast CAE61234 Hypothetical protein CBG05033 [Caenorhabditis briggsae] 0.0
blast T16835 hypothetical protein T07H6.1 - Caenorhabditis elegans 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.3E-89
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.1E-7
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741812.1 1 659-681
T07H6.1a 1 659-681
Sequence
Target Sequence 
>C. ELEGANS:174227_AT
aatgaggaacgggtgcagctctctgcgtaccgacgctcttggtatgcattatgggttcta
gtgattatactatctttgttaatatgggcatttgttggctactgtgcttattataaatcg
aaaagtcctcgaaaccgtccttacgataatatactcatttcaaagcccaattgaattgta
tgttatacttgtatcatttatctgatcagtcatgaaaacatctttgctcgatgcattccc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAGGAACGGGTGCAGCTCTCTG 51 165 19 Antisense
CGTACCGACGCTCTTGGTATGCATT 706 245 44 Antisense
GTATGCATTATGGGTTCTAGTGATT 172 455 60 Antisense
ATACTATCTTTGTTAATATGGGCAT 172 23 85 Antisense
ATATGGGCATTTGTTGGCTACTGTG 456 19 100 Antisense
TTGGCTACTGTGCTTATTATAAATC 108 705 113 Antisense
TCCTCGAAACCGTCCTTACGATAAT 258 593 144 Antisense
GTCCTTACGATAATATACTCATTTC 109 477 155 Antisense
ACTTGTATCATTTATCTGATCAGTC 252 105 205 Antisense
GATCAGTCATGAAAACATCTTTGCT 324 421 222 Antisense
AACATCTTTGCTCGATGCATTCCCG 632 137 235 Antisense
Sequence Source Affymetrix Proprietary Database