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[174226_at]

Description C36743_rc /REP_DB=TREMBL Accession /GB=C36743 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk472d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 33      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 42      6grp_total > 30      4grp_total > 63      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 751.4
(3)
P 		658.4
(0.9)
P 		673.8
(1.2)
P 		488.8
(-3)
P 		263
B 893.1
(3)
P 		536.2
(-3)
P 		754.1
(0.7)
P 		619.4
(-1.6)
P 		357
C 847.8
(2.9)
P 		363.2
(-3)
P 		775.1
(2)
P 		853.3
(3)
P 		490
avr 830.8
(3) 		519.3
(-3) 		734.3
(1.1) 		653.8
(-0.4) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 689.2
(0.3)
P 		914.3
(3)
P 		864
(2.4)
P 		780.9
(1.4)
P 		790.3
(1.5)
P 		418
(-3)
P 		496
B 731.2
(-2)
P 		976.3
(2.4)
P 		926.1
(1.5)
P 		1010.5
(3)
P 		701
(-2.6)
P 		677.1
(-3)
P 		333
C 963.7
(3)
P 		943.8
(2.6)
P 		718.7
(-1.4)
P 		822.5
(0.4)
P 		632.5
(-3)
P 		763.7
(-0.6)
P 		331
avr 794.7
(0.2) 		944.8
(3) 		836.3
(1) 		871.3
(1.6) 		707.9
(-1.4) 		619.6
(-3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 273.6
(3)
P 		142.9
(-0.9)
P 		176.1
(0.1)
P 		71.5
(-3)
P 		202
B 284.8
(3)
P 		132.4
(-3)
P 		174.7
(-1.3)
P 		132
(-3)
P 		153
C 280.6
(3)
P 		104.4
(-3)
P 		270.2
(2.6)
P 		143.9
(-1.7)
P 		176
avr 279.7
(3) 		126.6
(-2.6) 		207
(0.3) 		115.8
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 127.1
(-2.3)
P 		325.2
(3)
P 		188.2
(-0.7)
P 		198
(-0.4)
P 		238.5
(0.7)
P 		101.8
(-3)
P 		223
B 254.4
(-1.2)
P 		325
(3)
P 		224.9
(-3)
P 		267.6
(-0.4)
P 		284.8
(0.6)
P 		252.5
(-1.3)
P 		100
C 357.2
(3)
P 		288
(0.8)
P 		182.9
(-2.5)
P 		165.4
(-3)
P 		204.7
(-1.8)
P 		255.7
(-0.2)
P 		192
avr 246.2
(-0.5) 		312.7
(3) 		198.7
(-3) 		210.3
(-2.4) 		242.7
(-0.7) 		203.3
(-2.8) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22107
Sequence Type Exemplar sequence
Representative Public ID C36743 NCBI
Target Description C36743_rc /REP_DB=TREMBL Accession /GB=C36743 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk472d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076306 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-22) (tag-22) mRNA, complete cds. 11/11 None
ZK470.5b.2 ENSEMBL cdna:known chromosome:CEL140:X:4148631:4151872:-1 gene:ZK470.5 11/11 A 
ZK470.5b.1 ENSEMBL cdna:known chromosome:CEL140:X:4148631:4153417:-1 gene:ZK470.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076305 3/11 Cross Hyb Matching Probes None
ZK470.5a.2 3/11 Cross Hyb Matching Probes None
ZK470.5a.1 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180690 2 1 NM_076306 174226_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4148655-4148997(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK470.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11483 Temporarily assigned gene name protein 22, isoform b [Caenorhabditis elegans] ref|NP_508707.1| Temporarily Assigned Gene name family member (tag-22) [Caenorhabditis elegans] 1.0E-153
blast AAL11482 Temporarily assigned gene name protein 22, isoform a [Caenorhabditis elegans] ref|NP_508706.2| Temporarily Assigned Gene name family member (tag-22) [Caenorhabditis elegans] 1.0E-149
blast T27877 hypothetical protein ZK470.5 - Caenorhabditis elegans 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 2.6E-33
Pfam IPR001452 EMBL-EBI SH3 3.3E-20
Pfam IPR001452 EMBL-EBI SH3 4.5E-22
Sequence
Target Sequence 
>C. ELEGANS:174226_AT
aacaattgttgttttcttgtcttctttgcagcaatccattttttttctggacaaagcaag
tgaaaatctctttcgtcatttctatcactagccctgtgtttagatatgtttactgatttg
ccatccgccgtttttgataaattgaacggttgatcacggtttcagatatatttctcattt
tttctttggttctttttcttttcattcaagtttgtaattttatcaaataattgtccttaa
ctcacactttccattcatctcttcttcaattgtcttttgctccacttcacaacgctgcgt
tgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATTGTTGTTTTCTTGTCTTCT 98 135 17 Antisense
TTCTTGTCTTCTTTGCAGCAATCCA 630 689 30 Antisense
TTCTTTGCAGCAATCCATTTTTTTT 307 689 38 Antisense
ATATGTTTACTGATTTGCCATCCGC 398 21 120 Antisense
TTTGCCATCCGCCGTTTTTGATAAA 263 669 133 Antisense
GAACGGTTGATCACGGTTTCAGATA 482 347 160 Antisense
CACGGTTTCAGATATATTTCTCATT 143 199 171 Antisense
TTTTCTTTTCATTCAAGTTTGTAAT 289 677 210 Antisense
TAATTGTCCTTAACTCACACTTTCC 681 633 244 Antisense
CTTCTTCAATTGTCTTTTGCTCCAC 549 221 277 Antisense
CTCCACTTCACAACGCTGCGTTGTT 670 235 296 Antisense
Sequence Source Affymetrix Proprietary Database