[Home] | [Total List]

[174225_s_at]

Description C39012_rc /REP_DB=TREMBL Accession /GB=C39012 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk504e6 : 3prime end, single read.
Cluster 6grp_total > 48      4grp_total > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.2
(-3)
A 		5.2
(-2.4)
A 		7.3
(-2.1)
A 		42.5
(3)
A 		41
B 1.9
(-3)
A 		3.9
(-0.9)
A 		3.8
(-1)
A 		7.5
(3)
A 		6
C 12.8
(0)
A 		4.9
(-2.6)
A 		3.6
(-3)
A 		21.8
(3)
A 		18
avr 5.3
(-2.8) 		4.7
(-3) 		4.9
(-2.9) 		23.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53.7
(3)
A 		3.1
(-2.9)
A 		13.8
(-1.6)
A 		1.9
(-3)
A 		6.5
(-2.5)
A 		7.9
(-2.3)
A 		52
B 6.7
(-2.1)
A 		6.7
(-2.1)
A 		3.2
(-3)
A 		21.1
(1.6)
A 		4.7
(-2.6)
A 		26.8
(3)
A 		24
C 2.1
(-3)
A 		6.7
(-1.6)
A 		6.7
(-1.6)
A 		3.2
(-2.7)
A 		3.6
(-2.5)
A 		21.7
(3)
A 		20
avr 20.8
(3) 		5.5
(-2.8) 		7.9
(-1.9) 		8.7
(-1.6) 		4.9
(-3) 		18.8
(2.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		1.1
(-2.3)
A 		1.9
(-1.4)
A 		6.2
(3)
A 		6
B 0.6
(-3)
A 		1
(-0.6)
A 		0.9
(-1.2)
A 		1.6
(3)
A 		1
C 4.2
(3)
A 		1.4
(-2.8)
A 		1.3
(-3)
A 		3.7
(2)
A 		3
avr 1.7
(-1.8) 		1.2
(-3) 		1.4
(-2.5) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.9
(3)
A 		1.1
(-2.6)
A 		3
(-1.4)
A 		0.5
(-3)
A 		2
(-2)
A 		1.9
(-2.1)
A 		9
B 2.3
(-2)
A 		2.2
(-2.1)
A 		0.8
(-3)
A 		5.6
(0.1)
A 		1.9
(-2.3)
A 		10
(3)
A 		9
C 0.8
(-2.8)
A 		2
(-1.7)
A 		1.7
(-2)
A 		0.6
(-3)
A 		1.2
(-2.5)
A 		7.3
(3)
A 		7
avr 4.3
(0.3) 		1.8
(-2.9) 		1.8
(-2.9) 		2.2
(-2.4) 		1.7
(-3) 		6.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174225_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20843
Sequence Type Exemplar sequence
Representative Public ID C39012 NCBI
Target Description C39012_rc /REP_DB=TREMBL Accession /GB=C39012 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk504e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061449 NCBI Caenorhabditis elegans R07C3.7 (R07C3.7) mRNA, complete cds. 11/11 A 
SNAP00000022236 ENSEMBL cdna:SNAP chromosome:CEL140:II:916086:917414:1 11/11 None
GENEFINDER00000022256 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:916086:917414:1 11/11 None
R07C3.7 ENSEMBL cdna:known chromosome:CEL140:II:916086:919423:1 gene:R07C3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:917063-917389(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.7
Entrez Gene 173474 Entrez gene
SwissProt O16769 EMBL-EBI
WormBase CE12534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 0.0
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 1.0E-61
blast AAC68942 Hypothetical protein C44C8.4 [Caenorhabditis elegans] ref|NP_500007.1| C44C8.4 [Caenorhabditis elegans] 1.0E-60
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 5.0E-34
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:174225_S_AT
aattcatgtcacgcactctattaacagaatatcagagactattcgaatatggttggagga
gggccgggaaattggaacttgctggacgtttgaatctgaacgaaaagccgaaggaaaagt
tttcatggcggatttgaagaaagatactcgaggcacgactttggaggggccaccaggatc
cttccctactatcatttttcgaatgagtgactctacggagctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATGTCACGCACTCTATTAAC 293 175 16 Antisense
ATGTCACGCACTCTATTAACAGAAT 518 47 21 Antisense
TATGGTTGGAGGAGGGCCGGGAAAT 304 207 63 Antisense
GGGCCGGGAAATTGGAACTTGCTGG 25 491 76 Antisense
GGAACTTGCTGGACGTTTGAATCTG 354 529 89 Antisense
GAATCTGAACGAAAAGCCGAAGGAA 95 327 107 Antisense
GAAAAGTTTTCATGGCGGATTTGAA 226 323 129 Antisense
AAGATACTCGAGGCACGACTTTGGA 451 153 156 Antisense
CGACTTTGGAGGGGCCACCAGGATC 691 247 171 Antisense
TCCTTCCCTACTATCATTTTTCGAA 75 585 194 Antisense
GAATGAGTGACTCTACGGAGCTCCG 403 331 216 Antisense
Sequence Source Affymetrix Proprietary Database