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[174223_s_at] casein kinase

Description C53886_rc /REP_DB=TREMBL Accession /GB=C53886 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk324f5 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 22.6
(1.3)
A 		31.1
(3)
A 		1
(-3)
A 		25.4
(1.9)
A 		30
B 7.1
(-3)
A 		18.2
(-0.7)
A 		18.2
(-0.7)
A 		35.7
(3)
A 		29
C 25.7
(-0.6)
A 		12.4
(-2.9)
A 		11.7
(-3)
A 		47.4
(3)
A 		36
avr 18.5
(-1.1) 		20.6
(-0.6) 		10.3
(-3) 		36.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 24
(-2.1)
A 		4.1
(-3)
A 		27.2
(-1.9)
A 		8.6
(-2.8)
A 		54.7
(-0.6)
P 		130.3
(3)
P 		126
B 1.3
(-3)
A 		1.4
(-3)
A 		1.3
(-3)
A 		4.4
(-2.8)
A 		80.3
(2.2)
M 		92.9
(3)
P 		92
C 1.4
(-3)
A 		16.6
(-2.1)
A 		26.2
(-1.6)
A 		1.9
(-3)
A 		25.6
(-1.6)
A 		106.8
(3)
P 		105
avr 8.9
(-2.8) 		7.4
(-2.9) 		18.2
(-2.2) 		5
(-3) 		53.5
(-0.2) 		110
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.2
(3)
A 		6.7
(1.9)
A 		0.3
(-3)
A 		3.7
(-0.4)
A 		8
B 2.2
(-3)
A 		4.5
(-0.4)
A 		4.2
(-0.8)
A 		7.6
(3)
A 		5
C 8.5
(3)
A 		3.6
(-3)
A 		4.1
(-2.4)
A 		8
(2.4)
A 		5
avr 6.3
(2.8) 		4.9
(0.4) 		2.9
(-3) 		6.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.4
(-2.4)
A 		1.5
(-3)
A 		5.9
(-2.1)
A 		2.2
(-2.9)
A 		16.5
(-0)
P 		31.7
(3)
P 		30
B 0.5
(-3)
A 		0.5
(-3)
A 		0.3
(-3)
A 		1.2
(-2.8)
A 		32.6
(2.7)
M 		34.6
(3)
P 		34
C 0.5
(-3)
A 		5.1
(-2.2)
A 		6.7
(-1.9)
A 		0.4
(-3)
A 		8.3
(-1.7)
A 		35.7
(3)
P 		35
avr 1.8
(-2.9) 		2.4
(-2.8) 		4.3
(-2.4) 		1.3
(-3) 		19.1
(0.3) 		34
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174223_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20711
Sequence Type Exemplar sequence
Representative Public ID C53886 NCBI
Target Description C53886_rc /REP_DB=TREMBL Accession /GB=C53886 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk324f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062423 NCBI Caenorhabditis elegans T05A7.6 (T05A7.6) mRNA, complete cds. 11/11 A 
SNAP00000043915 ENSEMBL cdna:SNAP chromosome:CEL140:II:4668705:4671371:-1 11/11 None
GENEFINDER00000043931 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4668705:4672337:-1 11/11 None
T05A7.6 ENSEMBL cdna:known chromosome:CEL140:II:4668689:4671761:-1 gene:T05A7.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043777 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043792 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4668649-4669034(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase
Ensembl T05A7.6
Entrez Gene 173804 Entrez gene
SwissProt Q22203 EMBL-EBI
WormBase CE04892 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494824 T05A7.6 [Caenorhabditis elegans] gb|AAA81115.1| Hypothetical protein T05A7.6 [Caenorhabditis elegans] 0.0
blast AAK31524 Hypothetical protein F59A6.4 [Caenorhabditis elegans] ref|NP_494922.1| F59A6.4 [Caenorhabditis elegans] 0.0
blast CAE67848 Hypothetical protein CBG13435 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:174223_S_AT
gacaatttccaattctcaaatattctgaaacgcttgaaagatttggtcgtgtacgtcgac
gacatgcaatacgacaccactccagactactcgtacattctaaacttcctcaagacaact
gccaatgatgtaggtgccaagatcactaagaagttggattggatgggcaaactgaagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTTCCAATTCTCAAATATTC 35 365 40 Antisense
ATTCTCAAATATTCTGAAACGCTTG 176 11 51 Antisense
TTGAAAGATTTGGTCGTGTACGTCG 258 693 73 Antisense
TGGTCGTGTACGTCGACGACATGCA 109 553 83 Antisense
CGACGACATGCAATACGACACCACT 675 251 96 Antisense
ACTCCAGACTACTCGTACATTCTAA 458 99 118 Antisense
CTCGTACATTCTAAACTTCCTCAAG 93 233 129 Antisense
ACTTCCTCAAGACAACTGCCAATGA 546 101 143 Antisense
AACTGCCAATGATGTAGGTGCCAAG 551 141 156 Antisense
AGGTGCCAAGATCACTAAGAAGTTG 276 57 171 Antisense
GGATTGGATGGGCAAACTGAAGCAA 253 507 195 Antisense
Sequence Source Affymetrix Proprietary Database