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[174222_at]

Description C31184_rc /REP_DB=TREMBL Accession /GB=C31184 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273a7 : 3prime end, single read.
Cluster 6grp_total > 36      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 23.9
(-1.3)
A 		20.4
(-3)
A 		27.4
(0.4)
A 		32.6
(3)
A 		12
B 3.5
(-2.9)
A 		14.4
(-1.9)
A 		2.5
(-3)
A 		68.2
(3)
A 		66
C 19.4
(-3)
A 		33.6
(-1.5)
A 		21.1
(-2.8)
A 		75.1
(3)
A 		56
avr 15.6
(-3) 		22.8
(-2) 		17
(-2.8) 		58.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 90.6
(3)
A 		42.7
(-1.1)
A 		24.2
(-2.7)
A 		26.5
(-2.5)
A 		21.2
(-3)
A 		45.9
(-0.9)
A 		69
B 14
(-1.5)
A 		41.6
(3)
A 		15.7
(-1.2)
A 		4.9
(-3)
A 		7.1
(-2.6)
A 		30.8
(1.2)
A 		37
C 29.9
(0.7)
A 		19.2
(-0.8)
A 		45.3
(3)
A 		4.3
(-3)
A 		16.6
(-1.2)
A 		15
(-1.4)
A 		41
avr 44.8
(3) 		34.5
(1.1) 		28.4
(0) 		11.9
(-3) 		15
(-2.4) 		30.6
(0.4) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.7
(3)
A 		4.4
(-3)
A 		7.2
(0.9)
A 		4.8
(-2.4)
A 		4
B 1.1
(-2.8)
A 		3.6
(-1.7)
A 		0.6
(-3)
A 		14.5
(3)
A 		14
C 6.4
(-3)
A 		9.7
(0.1)
A 		7.3
(-2.1)
A 		12.7
(3)
A 		6
avr 5.4
(-2.6) 		5.9
(-2.1) 		5
(-3) 		10.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 16.7
(3)
A 		15.2
(2.2)
A 		5.3
(-3)
A 		6.7
(-2.3)
A 		6.4
(-2.4)
A 		11.2
(0.1)
A 		11
B 4.9
(-1.3)
A 		13.8
(3)
A 		3.8
(-1.8)
A 		1.3
(-3)
A 		2.9
(-2.2)
A 		11.5
(1.9)
A 		13
C 11.1
(2.8)
A 		5.9
(-0.2)
A 		11.5
(3)
A 		0.9
(-3)
A 		5.4
(-0.5)
A 		5
(-0.7)
A 		11
avr 10.9
(2.5) 		11.6
(3) 		6.9
(-0.3) 		3
(-3) 		4.9
(-1.7) 		9.2
(1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20707
Sequence Type Exemplar sequence
Representative Public ID C31184 NCBI
Target Description C31184_rc /REP_DB=TREMBL Accession /GB=C31184 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F19B10.1 ENSEMBL cdna:known chromosome:CEL140:II:3683171:3684990:1 gene:F19B10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017126 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017140 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3684699-3684979(+) 100.0 100.0
Public Domain and Genome References
Ensembl F19B10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52931 Hypothetical protein F19B10.1 [Caenorhabditis elegans] ref|NP_494614.1| F19B10.1 [Caenorhabditis elegans] 1.0E-110
blast CAE73851 Hypothetical protein CBG21426 [Caenorhabditis briggsae] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:174222_AT
gtattgcaaaatacctaccgactccgcccatccaaagataagacttttctctcagcagaa
cacttttctcacacgttccagaacatctctcttatcaccttccattttgttactatgtgc
ctgtccgctgtgactcatcaatatgaactgatcaaagtgggaacttttgaaattgaaatg
gacgatgacgtcatagaatttctggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTGCAAAATACCTACCGACTCC 82 453 35 Antisense
ACTCCGCCCATCCAAAGATAAGACT 264 95 55 Antisense
AAGATAAGACTTTTCTCTCAGCAGA 60 155 69 Antisense
GACTTTTCTCTCAGCAGAACACTTT 552 371 76 Antisense
GCAGAACACTTTTCTCACACGTTCC 516 313 89 Antisense
CGTTCCAGAACATCTCTCTTATCAC 274 247 108 Antisense
CTCTTATCACCTTCCATTTTGTTAC 13 229 123 Antisense
CATTTTGTTACTATGTGCCTGTCCG 207 215 137 Antisense
CCTGTCCGCTGTGACTCATCAATAT 245 267 154 Antisense
GTGACTCATCAATATGAACTGATCA 321 483 164 Antisense
GATGACGTCATAGAATTTCTGGAAT 341 409 218 Antisense
Sequence Source Affymetrix Proprietary Database