[Home] | [Total List]

[174221_at]

Description C57905_rc /REP_DB=TREMBL Accession /GB=C57905 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk361h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1221
1 2 3 4 range
A 773.5
(-1.9)
P 		590.2
(-3)
P 		651.1
(-2.6)
P 		1613.9
(3)
P 		1024
B 917.8
(-1.1)
P 		529.6
(-3)
P 		555.8
(-2.9)
P 		1750.7
(3)
P 		1221
C 713.7
(-2)
P 		684.3
(-2.2)
P 		574.3
(-3)
P 		1399.7
(3)
P 		825
avr 801.7
(-1.7) 		601.4
(-3) 		593.7
(-3) 		1588.1
(3) 		994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 620.4
(0.5)
P 		580.6
(-0.1)
P 		431.4
(-2.5)
P 		506.8
(-1.3)
P 		398.8
(-3)
P 		774.7
(3)
P 		376
B 491.7
(0.2)
P 		433.2
(-1.2)
P 		357.2
(-3)
P 		563.1
(1.8)
P 		417.3
(-1.6)
P 		612.7
(3)
P 		256
C 635.2
(2.9)
P 		469.2
(-0.6)
P 		560.5
(1.3)
P 		356.3
(-3)
P 		529.2
(0.7)
P 		640.4
(3)
P 		284
avr 582.4
(0.5) 		494.3
(-1.8) 		449.7
(-3) 		475.4
(-2.3) 		448.4
(-3) 		675.9
(3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 281.6
(3)
P 		128.1
(-3)
P 		170.2
(-1.4)
P 		236.2
(1.2)
P 		154
B 292.7
(1)
P 		130.8
(-3)
P 		128.8
(-3)
P 		373.1
(3)
P 		244
C 236.2
(3)
P 		196.7
(-3)
P 		200.2
(-2.5)
P 		236
(3)
P 		40
avr 270.2
(2.5) 		151.9
(-3) 		166.4
(-2.3) 		281.8
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 114.4
(-1.9)
P 		206.5
(3)
P 		94
(-3)
P 		128.5
(-1.2)
P 		120.3
(-1.6)
P 		188.6
(2)
P 		113
B 171.1
(0.6)
P 		144.2
(-0.6)
P 		86.7
(-3)
P 		149.2
(-0.4)
P 		169.5
(0.5)
P 		228.5
(3)
P 		142
C 235.4
(3)
P 		143.2
(-0.4)
P 		142.7
(-0.4)
P 		71.7
(-3)
P 		171.2
(0.6)
P 		214.4
(2.2)
P 		164
avr 173.6
(0.8) 		164.6
(0.3) 		107.8
(-3) 		116.5
(-2.5) 		153.7
(-0.3) 		210.5
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21897
Sequence Type Exemplar sequence
Representative Public ID C57905 NCBI
Target Description C57905_rc /REP_DB=TREMBL Accession /GB=C57905 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk361h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073916(11), NM_073915(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073916 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-260) (tag-260) mRNA, complete cds. 11/11 A 
NM_073915 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-260) (tag-260) mRNA, complete cds. 9/11 None
M04G12.1a ENSEMBL cdna:known chromosome:CEL140:V:13372706:13375539:-1 gene:M04G12.1 11/11 A 
M04G12.1b ENSEMBL cdna:known chromosome:CEL140:V:13372707:13382781:-1 gene:M04G12.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041632 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13372771-13373404(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04G12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03208 Hypothetical protein M04G12.1a [Caenorhabditis elegans] ref|NP_506317.2| Temporarily Assigned Gene name family member (tag-260) [Caenorhabditis elegans] 0.0
blast CAB03213 Hypothetical protein M04G12.1b [Caenorhabditis elegans] ref|NP_506316.1| Temporarily Assigned Gene name family member (tag-260) [Caenorhabditis elegans] 0.0
blast CAE62610 Hypothetical protein CBG06728 [Caenorhabditis briggsae] 1.0E-159
Sequence
Target Sequence 
>C. ELEGANS:174221_AT
gatccacaattaacacttctacctcatgtaacggcgccaatcaaacatctccagcctcca
caacaacttctgcggcttcttccacatctgccgccacgtcaccacaaaactgataacctg
tgacgtcacggagcacattaggcacaaatattttttctttcaatctctcttttttctcag
tcccactgaaaccgttcaaagctgcactcaatgcttttgtctgcttcaccacgatctcta
ctttttccccctttccaagttttctttctctctctctctcttcggtcccaactacggtgt
gatttcaagggacatttggtaataaatcttgagatttttttcctttctcatttccctttt
cctcgattacgcttttcactgcttttgggatttacggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCACAATTAACACTTCTACCTC 301 415 25 Antisense
TACCTCATGTAACGGCGCCAATCAA 215 649 44 Antisense
GACGTCACGGAGCACATTAGGCACA 323 375 146 Antisense
ATATTTTTTCTTTCAATCTCTCTTT 453 19 172 Antisense
TTTCTCAGTCCCACTGAAACCGTTC 307 671 197 Antisense
GAAACCGTTCAAAGCTGCACTCAAT 217 359 212 Antisense
GCACTCAATGCTTTTGTCTGCTTCA 127 317 228 Antisense
TTCGGTCCCAACTACGGTGTGATTT 698 683 305 Antisense
TGAGATTTTTTTCCTTTCTCATTTC 210 569 354 Antisense
TCGATTACGCTTTTCACTGCTTTTG 556 603 387 Antisense
TCACTGCTTTTGGGATTTACGGTTT 295 625 400 Antisense
Sequence Source Affymetrix Proprietary Database