[Home] | [Total List]

[174220_at]

Description C58887_rc /REP_DB=TREMBL Accession /GB=C58887 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_high_8_8 > 04      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 922
1 2 3 4 range
A 329.1
(-1.3)
P 		71.5
(-3)
P 		93.7
(-2.9)
M 		969.5
(3)
P 		898
B 279.9
(-1.5)
P 		87.3
(-3)
P 		94
(-2.9)
P 		842.1
(3)
P 		755
C 314.5
(-1.1)
P 		47.8
(-3)
P 		114.3
(-2.5)
P 		880.3
(3)
P 		833
avr 307.8
(-1.3) 		68.9
(-3) 		100.7
(-2.8) 		897.3
(3) 		828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 287.5
(-0.2)
P 		287.1
(-0.2)
P 		357.9
(3)
P 		269.1
(-1)
P 		356.1
(2.9)
P 		225.8
(-3)
P 		132
B 478.2
(3)
P 		336.8
(-0.7)
P 		390.7
(0.7)
P 		246.7
(-3)
P 		332.8
(-0.8)
P 		307.7
(-1.4)
P 		232
C 307.6
(0.7)
P 		257.5
(-1.8)
P 		231.8
(-3)
P 		310.6
(0.8)
P 		356.4
(3)
P 		299
(0.2)
P 		125
avr 357.8
(3) 		293.8
(-1.7) 		326.8
(0.7) 		275.5
(-3) 		348.4
(2.3) 		277.5
(-2.9) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 119.8
(2)
P 		15.5
(-3)
P 		24.5
(-2.6)
M 		141.9
(3)
P 		126
B 89.3
(-0.4)
P 		21.6
(-3)
P 		21.8
(-3)
P 		179.5
(3)
P 		158
C 104.1
(1)
P 		13.7
(-3)
P 		39.8
(-1.8)
P 		148.4
(3)
P 		135
avr 104.4
(0.8) 		16.9
(-3) 		28.7
(-2.5) 		156.6
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 53
(-3)
P 		102.1
(2.4)
P 		77.9
(-0.3)
P 		68.2
(-1.3)
P 		107.5
(3)
P 		55
(-2.8)
P 		55
B 166.4
(3)
P 		112.1
(-0.2)
P 		94.9
(-1.2)
P 		65.3
(-3)
P 		135.2
(1.1)
P 		114.7
(-0.1)
P 		101
C 114
(2.9)
P 		78.6
(-0.9)
P 		59
(-3)
P 		62.5
(-2.6)
P 		115.3
(3)
P 		100.1
(1.4)
P 		56
avr 111.1
(2.1) 		97.6
(0.6) 		77.3
(-1.7) 		65.3
(-3) 		119.3
(3) 		89.9
(-0.3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20705
Sequence Type Exemplar sequence
Representative Public ID C58887 NCBI
Target Description C58887_rc /REP_DB=TREMBL Accession /GB=C58887 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062411 NCBI Caenorhabditis elegans F35D11.3 (F35D11.3) mRNA, complete cds. 11/11 A 
SNAP00000013540 ENSEMBL cdna:SNAP chromosome:CEL140:II:4609086:4611929:1 11/11 None
F35D11.3.2 ENSEMBL cdna:known chromosome:CEL140:II:4608357:4612026:1 gene:F35D11.3 11/11 None
F35D11.3.1 ENSEMBL cdna:known chromosome:CEL140:II:4608359:4612026:1 gene:F35D11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013553 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4611677-4611966(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.3
Entrez Gene 173798 Entrez gene
SwissProt Q20035 EMBL-EBI
WormBase CE31803 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23276.1.S1_S_AT similar to transmembrane and coiled-coil domains 4 cfa
CANINE_2:CFAAFFX.23281.1.S1_AT similar to transmembrane and coiled-coil domains 4 cfa
CANINE_2:CFAAFFX.23283.1.S1_S_AT similar to transmembrane and coiled-coil domains 4 cfa
CHICKEN:GGAAFFX.2522.1.S1_AT similar to hypothetical protein LOC255104 gga
CHICKEN:GGAAFFX.2522.2.S1_S_AT similar to hypothetical protein LOC255104 gga
CHICKEN:GGAAFFX.2522.3.S1_S_AT similar to hypothetical protein LOC255104 gga
HU35KSUBB:RC_R06078_AT transmembrane and coiled-coil domains 4 hs
U133_X3P:HS2.18331.2.A1_3P_A_AT transmembrane and coiled-coil domains 4 hs
U133_X3P:HS.18331.0.A1_3P_AT transmembrane and coiled-coil domains 4 hs
HG-U133_PLUS_2:1560292_A_AT transmembrane and coiled-coil domains 4 hs
HG-U133_PLUS_2:227007_AT transmembrane and coiled-coil domains 4 hs
HG-U133B:227007_AT transmembrane and coiled-coil domains 4 hs
HG-U95B:59025_AT transmembrane and coiled-coil domains 4 hs
HG-U133_PLUS_2:233107_AT Transmembrane and coiled-coil domains 4 hs
HG-U133B:233107_AT Transmembrane and coiled-coil domains 4 hs
U133_X3P:HS.287744.0.S1_3P_X_AT Transmembrane and coiled-coil domains 4 hs
HG-U133_PLUS_2:235738_AT Transmembrane and coiled-coil domains 4 hs
HG-U133B:235738_AT Transmembrane and coiled-coil domains 4 hs
HG-U95B:46411_AT Transmembrane and coiled-coil domains 4 hs
HU35KSUBC:RC_N21548_AT Transmembrane and coiled-coil domains 4 hs
U133_X3P:HS.43018.0.A1_3P_AT Transmembrane and coiled-coil domains 4 hs
MOUSE430_2:1431810_A_AT ransmembrane and coiled-coil domains 4 mm
MOE430A:1431810_A_AT ransmembrane and coiled-coil domains 4 mm
MOUSE430A_2:1431810_A_AT ransmembrane and coiled-coil domains 4 mm
MG-U74BV2:109318_AT ransmembrane and coiled-coil domains 4 mm
MOE430B:1447636_X_AT ransmembrane and coiled-coil domains 4 mm
MOUSE430_2:1447636_X_AT ransmembrane and coiled-coil domains 4 mm
RAE230B:1391818_AT similar to RIKEN cDNA 4632413C14 rn
RAT230_2:1391818_AT similar to RIKEN cDNA 4632413C14 rn
RG-U34B:RC_AI059095_AT similar to RIKEN cDNA 4632413C14 rn
Protein Similarities
Method ID Description E-Value
blast AAA68758 Hypothetical protein F35D11.3 [Caenorhabditis elegans] ref|NP_494812.2| F35D11.3 [Caenorhabditis elegans] 0.0
blast CAE67869 Hypothetical protein CBG13461 [Caenorhabditis briggsae] 0.0
blast CAI19015 novel protein [Homo sapiens] emb|CAI20091.1| novel protein [Homo sapiens] 3.0E-91
blast CAI19015 novel protein [Homo sapiens] emb|CAI20091.1| novel protein [Homo sapiens] 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR007941 EMBL-EBI Protein of unknown function DUF726 1.0E-126
Pfam IPR007941 EMBL-EBI Protein of unknown function DUF726 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494812.2 2 218-240,255-277
F35D11.3.2 2 218-240,255-277
F35D11.3.1 2 218-240,255-277
SNAP00000013540 2 204-226,241-263
Sequence
Target Sequence 
>C. ELEGANS:174220_AT
ctcaaaacgtctaaccgaggttctgaatgcagtcggcgttaaagttgggccacattccga
agacagtgtggtcgacctgacacaactcgaaggtccacacgaagcaactggtcaggcgga
agaagctatcaattatcagtcaaccggtgaagaggaagagcatccaattgtgcatccgat
aaatttagaaaatatccatgaagtcaaagttttagatagtcctcacaaaaacgaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAACGTCTAACCGAGGTTCTG 52 111 23 Antisense
GGTTCTGAATGCAGTCGGCGTTAAA 249 507 41 Antisense
AAAGTTGGGCCACATTCCGAAGACA 547 119 63 Antisense
GACAGTGTGGTCGACCTGACACAAC 299 369 84 Antisense
CTGACACAACTCGAAGGTCCACACG 641 237 99 Antisense
GGTCCACACGAAGCAACTGGTCAGG 273 499 114 Antisense
GCAACTGGTCAGGCGGAAGAAGCTA 201 319 126 Antisense
GAAGCTATCAATTATCAGTCAACCG 210 343 144 Antisense
AGAGCATCCAATTGTGCATCCGATA 112 69 179 Antisense
GTCAAAGTTTTAGATAGTCCTCACA 551 463 225 Antisense
GATAGTCCTCACAAAAACGAATTCT 547 425 237 Antisense
Sequence Source Affymetrix Proprietary Database