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[174219_at]

Description C55647_rc /REP_DB=TREMBL Accession /GB=C55647 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk191e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 20      6grp_total > 17      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 796
(3)
P 		761.3
(2.2)
P 		753.3
(2)
P 		545.8
(-3)
P 		250
B 889.9
(1.4)
P 		1008.2
(3)
P 		782.5
(-0.1)
P 		577.9
(-3)
P 		430
C 858.5
(1.2)
P 		936.2
(3)
P 		796.5
(-0.3)
P 		682.4
(-3)
P 		254
avr 848.1
(1.9) 		901.9
(3) 		777.4
(0.5) 		602
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 835
1 2 3 4 5 6 range
A 1478.1
(3)
P 		880
(-1.3)
P 		803.3
(-1.8)
P 		642.8
(-3)
P 		1104.8
(0.3)
P 		891.8
(-1.2)
P 		835
B 1396.4
(3)
P 		1084.9
(-0.4)
P 		1165.2
(0.5)
P 		969.7
(-1.6)
P 		841.7
(-3)
P 		913
(-2.2)
P 		555
C 1153.7
(3)
P 		952.5
(0.4)
P 		810.6
(-1.4)
P 		683.7
(-3)
P 		827.5
(-1.2)
P 		893.9
(-0.3)
P 		470
avr 1342.7
(3) 		972.5
(-0.8) 		926.4
(-1.3) 		765.4
(-3) 		924.7
(-1.3) 		899.6
(-1.6) 		577
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 289.8
(3)
P 		165.3
(-0.6)
P 		196.9
(0.3)
P 		79.9
(-3)
P 		210
B 283.8
(3)
P 		249
(1.7)
P 		181.3
(-0.8)
P 		123.2
(-3)
P 		161
C 284.2
(3)
P 		269.2
(2.5)
P 		277.6
(2.8)
P 		115.1
(-3)
P 		169
avr 285.9
(3) 		227.8
(1.1) 		218.6
(0.8) 		106.1
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 272.5
(0.9)
P 		313
(2.3)
P 		174.9
(-2.6)
P 		163
(-3)
P 		333.4
(3)
P 		217.1
(-1.1)
P 		170
B 485.9
(3)
P 		361.1
(-0.3)
P 		282.9
(-2.3)
P 		256.8
(-3)
P 		342
(-0.8)
P 		340.4
(-0.8)
P 		229
C 427.6
(3)
P 		290.6
(0.2)
P 		206.3
(-1.6)
P 		137.5
(-3)
P 		267.8
(-0.3)
P 		299.2
(0.3)
P 		290
avr 395.3
(3) 		321.6
(0.9) 		221.4
(-2) 		185.8
(-3) 		314.4
(0.7) 		285.6
(-0.1) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20355
Sequence Type Exemplar sequence
Representative Public ID C55647 NCBI
Target Description C55647_rc /REP_DB=TREMBL Accession /GB=C55647 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk191e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W05B5.1 ENSEMBL cdna:known chromosome:CEL140:I:13050813:13053586:1 gene:W05B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13053227-13053507(+) 100.0 100.0
Public Domain and Genome References
Ensembl W05B5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04917 Hypothetical protein W05B5.1 [Caenorhabditis elegans] ref|NP_493282.1| W05B5.1 [Caenorhabditis elegans] 1.0E-112
blast CAE60696 Hypothetical protein CBG04358 [Caenorhabditis briggsae] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:174219_AT
tatcccaaactaactttcgaacaatttttcatttttttataattatgccccgcccacttc
ttggctctaccaccacccactcatattttttcatactgtaccggtgtcacaaccctaccg
taattcgtataatctgcttggcttttttccatctagaccaccgcccacttttgtcactga
gcttttttttaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCCAAACTAACTTTCGAACAAT 654 655 68 Antisense
TCATTTTTTTATAATTATGCCCCGC 384 619 96 Antisense
ACCACCCACTCATATTTTTTCATAC 582 85 139 Antisense
TTTTTCATACTGTACCGGTGTCACA 583 673 154 Antisense
CATACTGTACCGGTGTCACAACCCT 644 207 159 Antisense
GTCACAACCCTACCGTAATTCGTAT 31 463 173 Antisense
AATTCGTATAATCTGCTTGGCTTTT 472 177 189 Antisense
TAATCTGCTTGGCTTTTTTCCATCT 695 635 197 Antisense
CTTGGCTTTTTTCCATCTAGACCAC 566 217 204 Antisense
CCCACTTTTGTCACTGAGCTTTTTT 365 255 231 Antisense
TTGTCACTGAGCTTTTTTTTACCCA 80 707 238 Antisense
Sequence Source Affymetrix Proprietary Database