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[174217_at]

Description C32033_rc /REP_DB=TREMBL Accession /GB=C32033 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk314c9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 36      6grp_total > 02      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 151.5
(3)
P 		120.4
(-0.6)
P 		99.7
(-3)
P 		151.2
(3)
P 		52
B 176.5
(1.8)
P 		191.1
(3)
P 		119
(-3)
A 		172.1
(1.4)
P 		72
C 140
(-2.7)
P 		264.6
(3)
P 		177
(-1)
P 		133.8
(-3)
A 		131
avr 156
(-0.6) 		192
(3) 		131.9
(-3) 		152.4
(-1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 191.4
(1.3)
P 		141.9
(-1.1)
P 		101.4
(-3)
A 		122.7
(-2)
P 		227
(3)
P 		128.2
(-1.7)
P 		126
B 208.6
(1.8)
P 		234.9
(3)
P 		107.3
(-3)
A 		130.2
(-1.9)
P 		174.1
(0.1)
P 		120.5
(-2.4)
P 		128
C 219.2
(1)
P 		283.9
(3)
P 		91.6
(-3)
P 		201.4
(0.4)
P 		183.6
(-0.1)
P 		113.7
(-2.3)
P 		192
avr 206.4
(2.3) 		220.2
(3) 		100.1
(-3) 		151.4
(-0.4) 		194.9
(1.7) 		120.8
(-2) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.2
(3)
P 		26.1
(-2.3)
P 		26.1
(-2.3)
P 		22.1
(-3)
P 		33
B 56.3
(3)
P 		47.2
(1.1)
P 		27.6
(-3)
A 		36.7
(-1.1)
P 		29
C 46.4
(-0.3)
P 		76.1
(3)
P 		61.7
(1.4)
P 		22.6
(-3)
A 		54
avr 52.6
(3) 		49.8
(2.3) 		38.5
(-0.3) 		27.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 35.3
(-1.3)
P 		50.5
(0.7)
P 		22.1
(-3)
A 		31.1
(-1.8)
P 		68.5
(3)
P 		31.2
(-1.8)
P 		46
B 72.6
(2.4)
P 		78.2
(3)
P 		26
(-3)
A 		34.5
(-2)
P 		70.7
(2.1)
P 		44.9
(-0.8)
P 		52
C 81.3
(2.5)
P 		86.6
(3)
P 		23.3
(-3)
P 		40.5
(-1.4)
P 		59.4
(0.4)
P 		38.1
(-1.6)
P 		63
avr 63.1
(1.9) 		71.8
(3) 		23.8
(-3) 		35.4
(-1.6) 		66.2
(2.3) 		38.1
(-1.2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22307
Sequence Type Exemplar sequence
Representative Public ID C32033 NCBI
Target Description C32033_rc /REP_DB=TREMBL Accession /GB=C32033 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk314c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F31A3.5 ENSEMBL cdna:known chromosome:CEL140:X:17554914:17561374:-1 gene:F31A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17554922-17555209(-) 100.0 100.0
Public Domain and Genome References
Ensembl F31A3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36859 Hypothetical protein F31A3.5 [Caenorhabditis elegans] ref|NP_510840.2| F31A3.5 [Caenorhabditis elegans] 0.0
blast CAE58695 Hypothetical protein CBG01874 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174217_AT
tatgttcctgttttttattttcctgtaattttttccctttcacagttttcaacctcctcc
ccatccctcacctaatttttaatcagcaactagtcatactctaatttcaactccctctat
gcacaatactaatacgtattctttccattttatgcgctgtgtcctcactctttcagcaat
tgacggtgataccaaaatgttcacttttcatttctacaacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTCCTGTTTTTTATTTTCCTG 189 655 47 Antisense
TCCTGTAATTTTTTCCCTTTCACAG 579 591 67 Antisense
CCATCCCTCACCTAATTTTTAATCA 689 271 107 Antisense
TTTAATCAGCAACTAGTCATACTCT 346 669 124 Antisense
GTCATACTCTAATTTCAACTCCCTC 466 467 139 Antisense
AACTCCCTCTATGCACAATACTAAT 543 141 155 Antisense
ATACTAATACGTATTCTTTCCATTT 177 5 172 Antisense
TCTTTCCATTTTATGCGCTGTGTCC 578 615 186 Antisense
TCCTCACTCTTTCAGCAATTGACGG 694 589 208 Antisense
GACGGTGATACCAAAATGTTCACTT 267 377 228 Antisense
GTTCACTTTTCATTTCTACAACAGA 413 445 245 Antisense
Sequence Source Affymetrix Proprietary Database