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[174216_at]

Description C32586_rc /REP_DB=TREMBL Accession /GB=C32586 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk333c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 78      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 86      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 909.8
(-0.2)
P 		701.2
(-2.5)
P 		656.2
(-3)
P 		1205.2
(3)
P 		549
B 740.4
(-2.2)
P 		651.3
(-3)
P 		737.8
(-2.2)
P 		1313.3
(3)
P 		662
C 915.4
(0.7)
P 		641.4
(-3)
P 		808.7
(-0.7)
P 		1083.3
(3)
P 		442
avr 855.2
(-0.9) 		664.6
(-3) 		734.2
(-2.2) 		1200.6
(3) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 548
1 2 3 4 5 6 range
A 915.7
(1.7)
P 		866.3
(0.8)
P 		768.1
(-1)
P 		659.5
(-3)
P 		945.9
(2.3)
P 		986.7
(3)
P 		327
B 832.4
(-2.4)
P 		869
(-1.9)
P 		791.9
(-3)
P 		945.4
(-0.8)
P 		924.2
(-1.1)
P 		1207
(3)
P 		415
C 923.4
(-0.6)
P 		831.1
(-2.4)
P 		798.5
(-3)
P 		946.5
(-0.2)
P 		817.5
(-2.6)
P 		1112.7
(3)
P 		314
avr 890.5
(-1) 		855.5
(-1.7) 		786.2
(-3) 		850.5
(-1.8) 		895.9
(-0.9) 		1102.1
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 331.2
(3)
P 		152.2
(-3)
P 		171.5
(-2.4)
P 		176.4
(-2.2)
P 		179
B 236.1
(0.8)
P 		160.9
(-3)
P 		171
(-2.5)
P 		279.9
(3)
P 		119
C 303
(3)
P 		184.4
(-2.9)
P 		281.9
(1.9)
P 		182.7
(-3)
P 		120
avr 290.1
(3) 		165.8
(-3) 		208.1
(-1) 		213
(-0.7) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 168.8
(-2.9)
P 		308.1
(3)
P 		167.3
(-3)
P 		167.3
(-3)
P 		285.4
(2)
P 		240.2
(0.1)
P 		141
B 289.6
(-0.7)
P 		289.3
(-0.7)
P 		192.3
(-3)
P 		250.4
(-1.6)
P 		375.5
(1.3)
P 		450.1
(3)
P 		258
C 342.3
(2)
P 		253.6
(-0.9)
P 		203.2
(-2.6)
P 		190.3
(-3)
P 		264.5
(-0.6)
P 		372.5
(3)
P 		182
avr 266.9
(-0.1) 		283.7
(0.5) 		187.6
(-3) 		202.7
(-2.5) 		308.5
(1.4) 		354.3
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20298
Sequence Type Exemplar sequence
Representative Public ID C32586 NCBI
Target Description C32586_rc /REP_DB=TREMBL Accession /GB=C32586 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk333c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059437 NCBI Caenorhabditis elegans K04F10.7 (K04F10.7) mRNA, complete cds. 11/11 None
K04F10.7 ENSEMBL cdna:known chromosome:CEL140:I:6374532:6376213:1 gene:K04F10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6375782-6376067(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F10.7
Entrez Gene 172335 Entrez gene
SwissProt O44772 EMBL-EBI
WormBase CE18015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588991_AT similar to CG4452-PA, isoform A cfa
CANINE_2:CFA.16894.1.S1_AT similar to CG4452-PA, isoform A cfa
CANINE_2:CFAAFFX.7089.1.S1_S_AT similar to CG4452-PA, isoform A cfa
CHICKEN:GGA.17563.1.S1_S_AT similar to RIKEN cDNA 2810485I05 gga
CHICKEN:GGAAFFX.11035.1.S1_S_AT similar to RIKEN cDNA 2810485I05 gga
CHICKEN:GGAAFFX.25198.2.S1_AT similar to RIKEN cDNA 2810485I05 gga
MG-U74AV2:104193_AT RIKEN cDNA 2810485I05 gene mm
MU11KSUBA:AA170292_S_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1426986_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1426986_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1426986_AT RIKEN cDNA 2810485I05 gene mm
MU19KSUBC:TC38287_AT RIKEN cDNA 2810485I05 gene, mRNA (cDNA clone IMAGE:4951621) mm
MU19KSUBC:TC40612_AT RIKEN cDNA 2810485I05 gene, mRNA (cDNA clone IMAGE:4951621) mm
Protein Similarities
Method ID Description E-Value
blast AAB96758 Hypothetical protein K04F10.7 [Caenorhabditis elegans] ref|NP_491838.1| K04F10.7 [Caenorhabditis elegans] 1.0E-134
blast CAE67173 Hypothetical protein CBG12605 [Caenorhabditis briggsae] 3.0E-91
blast BAE26192.1 unnamed protein product [Mus musculus] 5.0E-24
Sequence
Target Sequence 
>C. ELEGANS:174216_AT
tggttcgtgagctaatatcttttttaaaatgaaattatcttttcattgtattattcacct
aatatttacttcaatttgatccaaagtgcaccttccccctatcgctctccccggttgacc
cggcatccctttcactcgtcttctaattacaatctttggacgtagctacttctattaacc
tactaaatttgttatagtgtacccattttctgtcactgtcatcaatgcctgtctagtttg
ataatctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTCGTGAGCTAATATCTTTTTT 231 551 13 Antisense
ATCTTTTCATTGTATTATTCACCTA 640 31 49 Antisense
TATTCACCTAATATTTACTTCAATT 590 661 64 Antisense
AATTTGATCCAAAGTGCACCTTCCC 162 175 85 Antisense
CCTTTCACTCGTCTTCTAATTACAA 557 269 140 Antisense
ACAATCTTTGGACGTAGCTACTTCT 265 115 161 Antisense
AGCTACTTCTATTAACCTACTAAAT 277 65 176 Antisense
GTTATAGTGTACCCATTTTCTGTCA 513 447 203 Antisense
TTTTCTGTCACTGTCATCAATGCCT 163 677 218 Antisense
CACTGTCATCAATGCCTGTCTAGTT 267 199 226 Antisense
GCCTGTCTAGTTTGATAATCTGTGA 275 283 239 Antisense
Sequence Source Affymetrix Proprietary Database