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[174215_s_at]

Description C56372_rc /REP_DB=TREMBL Accession /GB=C56372 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk253g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 12.3
(-1.9)
A 		13.8
(-1.7)
A 		3.6
(-3)
A 		49.7
(3)
P 		46
B 33.5
(0.8)
A 		3.3
(-3)
A 		21.8
(-0.7)
A 		51.5
(3)
P 		48
C 39
(3)
A 		3.4
(-3)
A 		15.5
(-1)
A 		27.5
(1.1)
A 		36
avr 28.3
(0.6) 		6.8
(-3) 		13.6
(-1.9) 		42.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 49.6
(-3)
P 		103.3
(-1.3)
P 		153.1
(0.3)
P 		165.6
(0.6)
P 		209.6
(2)
P 		240.3
(3)
P 		191
B 92.8
(-3)
P 		107.8
(-2.7)
P 		202.3
(-0.6)
P 		156.3
(-1.6)
P 		230.4
(0.1)
P 		362.6
(3)
P 		270
C 112.5
(-2.3)
P 		89.7
(-2.7)
P 		74.3
(-3)
P 		158.4
(-1.4)
P 		180.3
(-0.9)
P 		382.4
(3)
P 		308
avr 85
(-3) 		100.3
(-2.6) 		143.2
(-1.6) 		160.1
(-1.1) 		206.8
(0) 		328.4
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.5
(0.4)
A 		3
(-1)
A 		0.9
(-3)
A 		7.3
(3)
P 		6
B 10.7
(2.8)
A 		0.8
(-3)
A 		5.1
(-0.5)
A 		11
(3)
P 		10
C 12.9
(3)
A 		1
(-3)
A 		5.4
(-0.8)
A 		4.6
(-1.2)
A 		12
avr 9.4
(3) 		1.6
(-3) 		3.8
(-1.3) 		7.6
(1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 9.1
(-3)
P 		36.7
(0.1)
P 		33.3
(-0.3)
P 		42
(0.6)
P 		63.2
(3)
P 		58.5
(2.5)
P 		54
B 32.3
(-3)
P 		35.9
(-2.8)
P 		49.1
(-2)
P 		41.4
(-2.5)
P 		93.6
(0.6)
P 		135.2
(3)
P 		103
C 41.7
(-1.7)
P 		27.4
(-2.5)
P 		18.9
(-3)
P 		31.9
(-2.3)
P 		58.3
(-0.8)
P 		128
(3)
P 		109
avr 27.7
(-3) 		33.3
(-2.6) 		33.8
(-2.5) 		38.4
(-2.2) 		71.7
(0.3) 		107.2
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174215_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21748
Sequence Type Exemplar sequence
Representative Public ID C56372 NCBI
Target Description C56372_rc /REP_DB=TREMBL Accession /GB=C56372 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk253g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072857 NCBI Caenorhabditis elegans B0507.8 (B0507.8) mRNA, complete cds. 11/11 None
GENEFINDER00000006065 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8763211:8765523:-1 11/11 None
B0507.8 ENSEMBL cdna:known chromosome:CEL140:V:8763274:8765339:-1 gene:B0507.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006055 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8763295-8763725(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.8
Entrez Gene 179252 Entrez gene
SwissProt Q22882 EMBL-EBI
WormBase CE28876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95861 Hypothetical protein B0507.8 [Caenorhabditis elegans] ref|NP_505258.1| B0507.8 [Caenorhabditis elegans] 1.0E-173
blast AAK95861 Hypothetical protein B0507.8 [Caenorhabditis elegans] ref|NP_505258.1| B0507.8 [Caenorhabditis elegans] 1.0E-172
blast T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 1.0E-168
blast T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 1.0E-167
blast CAE71578 Hypothetical protein CBG18532 [Caenorhabditis briggsae] 7.0E-58
blast CAE71578 Hypothetical protein CBG18532 [Caenorhabditis briggsae] 3.0E-52
Sequence
Target Sequence 
>C. ELEGANS:174215_S_AT
gtttcaatgagtgatgagctccggaagatcaaatctaaggtttcggattttcaaccagtc
attgctggcttgagacgtaatcttgagctcaagattgcaattgaagaagagaacaacaaa
cgttttagtgacttgaaagatgatctctttaatatcattaataatcttcaaccaattgcc
gaaaaccgtcgtgtaattactgagagtatccaacaaagacataacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCAATGAGTGATGAGCTCCGGA 322 449 28 Antisense
GATGAGCTCCGGAAGATCAAATCTA 571 411 40 Antisense
GAAGATCAAATCTAAGGTTTCGGAT 272 337 51 Antisense
TCGGATTTTCAACCAGTCATTGCTG 619 605 70 Antisense
GTCATTGCTGGCTTGAGACGTAATC 533 467 85 Antisense
GGCTTGAGACGTAATCTTGAGCTCA 580 537 94 Antisense
GAACAACAAACGTTTTAGTGACTTG 535 343 138 Antisense
TAATAATCTTCAACCAATTGCCGAA 325 635 186 Antisense
CAACCAATTGCCGAAAACCGTCGTG 665 183 196 Antisense
AAACCGTCGTGTAATTACTGAGAGT 512 125 210 Antisense
GAGTATCCAACAAAGACATAACGTG 648 387 231 Antisense
Sequence Source Affymetrix Proprietary Database