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[174214_at]

Description C53730_rc /REP_DB=TREMBL Accession /GB=C53730 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk323g5 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 3.6
(-3)
A 		6.3
(-2.8)
A 		10.2
(-2.6)
A 		99.6
(3)
A 		96
B 7.5
(-3)
A 		32.4
(-0.1)
A 		13.7
(-2.3)
A 		59.2
(3)
A 		52
C 24.6
(-2.1)
A 		29.7
(-1.7)
A 		13.4
(-3)
A 		86.3
(3)
M 		73
avr 11.9
(-3) 		22.8
(-2.1) 		12.4
(-3) 		81.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 46.6
(3)
A 		13
(-2)
A 		6.5
(-3)
A 		33.6
(1.1)
A 		40.3
(2.1)
A 		11
(-2.3)
A 		40
B 13.2
(-1.9)
A 		25.7
(-0.7)
A 		2.9
(-3)
A 		61.5
(3)
A 		20.1
(-1.2)
A 		10.7
(-2.2)
A 		59
C 8.6
(-1.5)
A 		31.5
(3)
A 		2.8
(-2.6)
A 		3
(-2.6)
A 		1
(-3)
A 		6.3
(-2)
A 		31
avr 22.8
(0.9) 		23.4
(1) 		4.1
(-3) 		32.7
(3) 		20.5
(0.4) 		9.3
(-1.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-3)
A 		1.4
(-3)
A 		2.7
(-2.4)
A 		14.6
(3)
A 		13
B 2.4
(-3)
A 		8
(0.3)
A 		3.2
(-2.5)
A 		12.6
(3)
A 		10
C 8.2
(-0.9)
A 		8.5
(-0.7)
A 		4.7
(-3)
A 		14.6
(3)
M 		10
avr 4
(-2.7) 		6
(-1.6) 		3.5
(-3) 		13.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.6
(1)
A 		4.6
(-1.2)
A 		1.4
(-3)
A 		8.5
(0.9)
A 		12.2
(3)
A 		2.7
(-2.3)
A 		11
B 4.6
(-1.5)
A 		8.5
(-0)
A 		0.7
(-3)
A 		16.3
(3)
A 		8.1
(-0.2)
A 		4
(-1.7)
A 		16
C 3.2
(-1.1)
A 		9.6
(3)
A 		0.7
(-2.7)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		2.1
(-1.8)
A 		9
avr 5.5
(0.6) 		7.6
(2.3) 		0.9
(-3) 		8.5
(3) 		6.9
(1.7) 		2.9
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20601
Sequence Type Exemplar sequence
Representative Public ID C53730 NCBI
Target Description C53730_rc /REP_DB=TREMBL Accession /GB=C53730 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk323g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53730
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53730 C53730_rc /REP_DB=TREMBL Accession /GB=C53730 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk323g5 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10525203-10525483(+) 98.93 100.0
Sequence
Target Sequence 
>C. ELEGANS:174214_AT
tattttcagagagaccggtcggatgacaattttcctatgtattgtgtctttctcgcactg
tctaatcacttaaatggagatgaaaaagagaagaaaatgcaaaaaaaaatgaaggaagaa
gatcggaaaattggtgcggtctctgttgtttttacaacgaatttcaaattggaacatctg
attaattagggtttagagaaggatgaccagaaatgagatttctttgttatagcttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTCAGAGAGACCGGTCGGATG 168 651 23 Antisense
GAGACCGGTCGGATGACAATTTTCC 155 393 33 Antisense
GGTCGGATGACAATTTTCCTATGTA 257 501 39 Antisense
TTCCTATGTATTGTGTCTTTCTCGC 281 699 54 Antisense
TATGTATTGTGTCTTTCTCGCACTG 93 657 58 Antisense
TTTCTCGCACTGTCTAATCACTTAA 439 671 71 Antisense
CGCACTGTCTAATCACTTAAATGGA 67 255 76 Antisense
GAAAATTGGTGCGGTCTCTGTTGTT 370 353 148 Antisense
GTGCGGTCTCTGTTGTTTTTACAAC 664 477 156 Antisense
GAAGGATGACCAGAAATGAGATTTC 152 335 220 Antisense
ATGAGATTTCTTTGTTATAGCTTAA 531 45 235 Antisense
Sequence Source Affymetrix Proprietary Database