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[174213_s_at]

Description C58675_rc /REP_DB=TREMBL Accession /GB=C58675 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370b3 : 3prime end, single read.
Cluster 6grp_total > 57      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.7
(-1.6)
A 		8.9
(-1.3)
A 		12.2
(3)
A 		7.6
(-3)
A 		5
B 5.1
(-3)
A 		9.4
(3)
A 		5.8
(-2)
A 		7.2
(-0.1)
A 		4
C 4
(-3)
A 		12
(3)
A 		4.1
(-2.9)
A 		5.2
(-2.1)
A 		8
avr 5.9
(-3) 		10.1
(3) 		7.4
(-0.9) 		6.7
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.2
(3)
A 		4.5
(-2.4)
A 		3.7
(-3)
A 		5
(-2)
A 		7.8
(0.3)
A 		6.7
(-0.6)
A 		8
B 7.7
(-2.3)
A 		10.6
(-1.1)
A 		12.5
(-0.4)
A 		8.4
(-2)
A 		5.9
(-3)
A 		21.1
(3)
A 		15
C 8.7
(-0.6)
A 		13.4
(2.7)
A 		5.3
(-2.9)
A 		13.9
(3)
A 		5.2
(-3)
A 		10.2
(0.4)
A 		9
avr 9.2
(-0.3) 		9.5
(0) 		7.2
(-2.2) 		9.1
(-0.4) 		6.3
(-3) 		12.7
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.2
(3)
A 		1.9
(-0.7)
A 		3.2
(3)
A 		1.1
(-3)
A 		2
B 1.6
(-1.7)
A 		2.3
(3)
A 		1.4
(-3)
A 		1.5
(-2.3)
A 		1
C 1.3
(-2.1)
A 		3.5
(3)
A 		1.4
(-1.8)
A 		0.9
(-3)
A 		3
avr 2
(0.4) 		2.6
(3) 		2
(0.4) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.1
(1.9)
A 		1.6
(0)
A 		0.8
(-3)
A 		1.3
(-1.1)
A 		2.4
(3)
A 		1.6
(0)
A 		2
B 2.7
(-2.5)
A 		3.5
(-1.6)
A 		3
(-2.2)
A 		2.2
(-3)
A 		2.4
(-2.8)
A 		7.9
(3)
A 		6
C 3.2
(1.1)
A 		4.1
(3)
A 		1.3
(-3)
A 		2.8
(0.2)
A 		1.7
(-2.1)
A 		3.4
(1.5)
A 		3
avr 2.7
(-0.7) 		3.1
(0.2) 		1.7
(-3) 		2.1
(-2.1) 		2.2
(-1.8) 		4.3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174213_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22119
Sequence Type Exemplar sequence
Representative Public ID C58675 NCBI
Target Description C58675_rc /REP_DB=TREMBL Accession /GB=C58675 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076347 NCBI Caenorhabditis elegans F14H12.6 (F14H12.6) mRNA, complete cds. 11/11 None
SNAP00000002235 ENSEMBL cdna:SNAP chromosome:CEL140:X:4357090:4357465:-1 11/11 None
F14H12.6 ENSEMBL cdna:known chromosome:CEL140:X:4357030:4357468:-1 gene:F14H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4357066-4357400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H12.6
Entrez Gene 180711 Entrez gene
SwissProt Q966K4 EMBL-EBI
WormBase CE25857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68328 Hypothetical protein F14H12.6 [Caenorhabditis elegans] ref|NP_508748.1| F14H12.6 [Caenorhabditis elegans] 6.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508748.1 1 57-79
F14H12.6 1 57-79
SNAP00000002235 1 57-79
Sequence
Target Sequence 
>C. ELEGANS:174213_S_AT
cttcaatcaattgctcaacctccttccaccaaaaacaacaattgggcctccagtcgattc
acctgtcacggacttccttttatctgcaaatatctacgtccaaatcagttttgtcgccgc
agttgtcggcgtttgctgctgctttgcagtttttgctcgttgccagaccaggtccgagcc
taaatggtacatagaaggtgtgatcgaacggagcagacacagcgcatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAATCAATTGCTCAACCTCCTT 452 221 26 Antisense
AACAATTGGGCCTCCAGTCGATTCA 695 131 62 Antisense
CTGTCACGGACTTCCTTTTATCTGC 559 239 88 Antisense
TCTGCAAATATCTACGTCCAAATCA 117 601 108 Antisense
GTCCAAATCAGTTTTGTCGCCGCAG 337 477 123 Antisense
GTCGCCGCAGTTGTCGGCGTTTGCT 490 475 138 Antisense
GCGTTTGCTGCTGCTTTGCAGTTTT 449 291 154 Antisense
TGCTTTGCAGTTTTTGCTCGTTGCC 697 579 165 Antisense
GCTCGTTGCCAGACCAGGTCCGAGC 287 283 180 Antisense
AGGTCCGAGCCTAAATGGTACATAG 569 53 195 Antisense
GAACGGAGCAGACACAGCGCATGCA 443 347 231 Antisense
Sequence Source Affymetrix Proprietary Database