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[174212_at]

Description C56439_rc /REP_DB=TREMBL Accession /GB=C56439 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261g4 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3.4
(-3)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		39.8
(3)
A 		36
B 1.6
(-3)
A 		14.9
(3)
A 		3.4
(-2.2)
A 		4.2
(-1.8)
A 		13
C 1.8
(-3)
A 		28.5
(0.7)
A 		3.6
(-2.7)
A 		44.7
(3)
A 		43
avr 2.3
(-3) 		15.7
(-0.1) 		3.5
(-2.7) 		29.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.2
(-1.8)
A 		2
(-2.6)
A 		1.9
(-2.6)
A 		17.4
(3)
A 		2.7
(-2.3)
A 		0.9
(-3)
A 		17
B 18
(3)
A 		2.7
(-2.6)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		12.8
(1.1)
A 		1.8
(-2.9)
A 		16
C 1.3
(-3)
A 		8.4
(-1.8)
A 		1.2
(-3)
A 		37.5
(3)
A 		11.7
(-1.3)
A 		2.2
(-2.8)
A 		36
avr 7.8
(-0.8) 		4.4
(-2) 		1.6
(-3) 		18.9
(3) 		9.1
(-0.4) 		1.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.5)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		5.8
(3)
A 		5
B 0.5
(-3)
A 		3.7
(3)
A 		0.8
(-2.4)
A 		0.9
(-2.3)
A 		3
C 0.6
(-3)
A 		8.2
(3)
A 		1.3
(-2.4)
A 		7.5
(2.4)
A 		8
avr 0.8
(-3) 		4.2
(2.2) 		1
(-2.7) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-2.1)
A 		0.7
(-2.3)
A 		0.4
(-2.7)
A 		4.4
(3)
A 		0.8
(-2.1)
A 		0.2
(-3)
A 		4
B 6.3
(3)
A 		0.9
(-2.5)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		5.2
(1.9)
A 		0.7
(-2.7)
A 		6
C 0.5
(-2.8)
A 		2.6
(-1.1)
A 		0.3
(-3)
A 		7.5
(3)
A 		3.8
(-0.1)
A 		0.7
(-2.7)
A 		7
avr 2.5
(0.4) 		1.4
(-1.4) 		0.4
(-3) 		4.1
(3) 		3.3
(1.7) 		0.5
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21318
Sequence Type Exemplar sequence
Representative Public ID C56439 NCBI
Target Description C56439_rc /REP_DB=TREMBL Accession /GB=C56439 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068859
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F33D4.6a ENSEMBL cdna:known chromosome:CEL140:IV:7715098:7717993:-1 gene:F33D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7715113-7715393(-) 100.0 100.0
Public Domain and Genome References
Ensembl F33D4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88378 Hypothetical protein F33D4.6a [Caenorhabditis elegans] ref|NP_501261.2| F33D4.6a [Caenorhabditis elegans] 1.0E-144
blast AAB88379 Hypothetical protein F33D4.6b [Caenorhabditis elegans] ref|NP_501260.2| F33D4.6b [Caenorhabditis elegans] 1.0E-143
blast CAE61947 Hypothetical protein CBG05945 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:174212_AT
ctaacacttgtctcagggaagcattcgtgtgtacagcatcaatcgtaaaagaaagattcg
caaaccacgtgtcgtcaaagttgaagaagtaactttttgttttatgcacttttagatgcc
ttcggataagttaattttgggggcctttttaatttgcactcaattgctgtcagcacgtta
gctgcaaattcaactaataactcatttgggaatatctttttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACACTTGTCTCAGGGAAGCATT 240 225 17 Antisense
CACTTGTCTCAGGGAAGCATTCGTG 258 197 21 Antisense
TTTATGCACTTTTAGATGCCTTCGG 332 673 117 Antisense
GCACTTTTAGATGCCTTCGGATAAG 459 315 122 Antisense
GATGCCTTCGGATAAGTTAATTTTG 485 413 131 Antisense
TGGGGGCCTTTTTAATTTGCACTCA 102 553 154 Antisense
TTTGCACTCAATTGCTGTCAGCACG 669 667 169 Antisense
ATTGCTGTCAGCACGTTAGCTGCAA 703 5 179 Antisense
AGCACGTTAGCTGCAAATTCAACTA 560 75 188 Antisense
GCTGCAAATTCAACTAATAACTCAT 379 297 197 Antisense
AACTCATTTGGGAATATCTTTTTAG 524 139 215 Antisense
Sequence Source Affymetrix Proprietary Database