[Home] | [Total List]

[174210_at]

Description C31206_rc /REP_DB=TREMBL Accession /GB=C31206 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273c8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 02      6grp_total > 19      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 69.6
(3)
P 		49.2
(-2.9)
A 		49
(-3)
P 		68.3
(2.6)
P 		21
B 49.6
(-0.4)
P 		48.1
(-0.9)
A 		42
(-3)
P 		59.5
(3)
P 		18
C 53
(-0.5)
P 		34
(-3)
P 		44.9
(-1.6)
P 		80.5
(3)
P 		47
avr 57.4
(0.2) 		43.8
(-3) 		45.3
(-2.6) 		69.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 49.9
(-0.2)
P 		49.3
(-0.3)
P 		67.3
(3)
P 		43.4
(-1.4)
P 		34.4
(-3)
P 		55.8
(0.9)
P 		33
B 37.4
(-1.1)
P 		33.1
(-1.8)
P 		51.3
(1)
A 		44.9
(0)
P 		63.7
(3)
P 		25.6
(-3)
P 		38
C 84.5
(3)
P 		43.4
(-2.3)
P 		38.3
(-3)
P 		45.9
(-2)
P 		61.5
(0)
P 		40
(-2.8)
P 		46
avr 57.3
(3) 		41.9
(-2.5) 		52.3
(1.2) 		44.7
(-1.5) 		53.2
(1.5) 		40.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 25.3
(3)
P 		10.7
(-2.7)
A 		12.8
(-1.9)
P 		10
(-3)
P 		15
B 15.8
(3)
P 		11.9
(-0.8)
A 		9.7
(-3)
P 		12.7
(-0)
P 		6
C 17.5
(3)
P 		9.8
(-3)
P 		15.7
(1.6)
P 		13.6
(-0)
P 		8
avr 19.5
(3) 		10.8
(-3) 		12.7
(-1.7) 		12.1
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.2
(-3)
P 		17.5
(3)
P 		14.7
(1)
P 		11
(-1.7)
P 		10.4
(-2.1)
P 		13.6
(0.2)
P 		8
B 13
(-1.7)
P 		11
(-2.5)
P 		12.5
(-1.9)
A 		11.9
(-2.1)
P 		25.9
(3)
P 		9.5
(-3)
P 		16
C 31.3
(3)
P 		13.2
(-1.9)
P 		9.7
(-2.9)
P 		9.2
(-3)
P 		19.9
(-0.1)
P 		13.4
(-1.9)
P 		22
avr 17.8
(2.3) 		13.9
(-0.6) 		12.3
(-1.8) 		10.7
(-3) 		18.7
(3) 		12.2
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22049
Sequence Type Exemplar sequence
Representative Public ID C31206 NCBI
Target Description C31206_rc /REP_DB=TREMBL Accession /GB=C31206 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C02B8.6 ENSEMBL cdna:known chromosome:CEL140:X:8133115:8136268:-1 gene:C02B8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8133152-8133432(-) 100.0 100.0
Public Domain and Genome References
Ensembl C02B8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81439 Hypothetical protein C02B8.6 [Caenorhabditis elegans] ref|NP_509369.2| C02B8.6 [Caenorhabditis elegans] sp|Q11096|YWZ6_CAEEL Hypothetical RING finger protein C02B8.6 in chromosome X 0.0
blast T15375 hypothetical protein C02B8.6 - Caenorhabditis elegans 0.0
blast CAE64137 Hypothetical protein CBG08753 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.7E-9
Pfam IPR004170 EMBL-EBI WWE domain 7.8E-29
Sequence
Target Sequence 
>C. ELEGANS:174210_AT
tgcattcaaacatttattatccataatctgaactttttctggttttttacggatccccca
tcttcctcacaacacgtttttaatgctggtttaccaacatctagttcttgatatcgtatt
gttacttagtaatataattgcatgttcttcccatctctcccatttcgcttttcaactttt
ttgtacattccagtagtatgttcgtaactttatttggaatatttatctgctttactcaaa
aacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTCAAACATTTATTATCCATA 518 579 18 Antisense
TTATCCATAATCTGAACTTTTTCTG 24 681 34 Antisense
CATCTTCCTCACAACACGTTTTTAA 323 213 76 Antisense
CACAACACGTTTTTAATGCTGGTTT 601 193 85 Antisense
GCTGGTTTACCAACATCTAGTTCTT 609 293 102 Antisense
TCTAGTTCTTGATATCGTATTGTTA 112 615 117 Antisense
TATAATTGCATGTTCTTCCCATCTC 116 661 150 Antisense
TTCAACTTTTTTGTACATTCCAGTA 250 685 188 Antisense
CATTCCAGTAGTATGTTCGTAACTT 596 215 203 Antisense
TGGAATATTTATCTGCTTTACTCAA 321 547 232 Antisense
ATTTATCTGCTTTACTCAAAAACCA 465 13 238 Antisense
Sequence Source Affymetrix Proprietary Database