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[174209_at]

Description C59821_rc /REP_DB=TREMBL Accession /GB=C59821 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443c2 : 3prime end, single read.
Cluster 6grp_total > 30      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 12.9
(-3)
A 		37.2
(2.4)
A 		12.7
(-3)
A 		39.7
(3)
A 		27
B 18.8
(-3)
A 		26.5
(-1.3)
A 		22
(-2.3)
A 		45.3
(3)
A 		27
C 6.9
(-2.9)
A 		14.3
(-2.5)
A 		5.2
(-3)
A 		108.5
(3)
A 		103
avr 12.9
(-3) 		26
(-1.5) 		13.3
(-3) 		64.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.2
(-2.6)
A 		22.9
(3)
A 		12.8
(-0.2)
A 		16.9
(1.1)
A 		3.9
(-3)
A 		3.9
(-3)
A 		19
B 9.2
(0.2)
A 		5.5
(-1.7)
A 		14.6
(3)
A 		3
(-3)
A 		8.4
(-0.2)
A 		4.6
(-2.2)
A 		12
C 5.4
(-0.9)
A 		3.9
(-2.1)
A 		3.2
(-2.6)
A 		10.4
(3)
A 		4
(-2)
A 		2.7
(-3)
A 		8
avr 6.6
(-0.5) 		10.8
(3) 		10.2
(2.5) 		10.1
(2.4) 		5.4
(-1.6) 		3.7
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.7
(-1.3)
A 		8.1
(3)
A 		3.3
(-3)
A 		5.8
(0.1)
A 		5
B 6
(-1.8)
A 		6.5
(-1.2)
A 		5.1
(-3)
A 		9.7
(3)
A 		5
C 2.3
(-2.8)
A 		4.1
(-2.2)
A 		1.8
(-3)
A 		18.3
(3)
A 		17
avr 4.3
(-2.3) 		6.2
(-0.9) 		3.4
(-3) 		11.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2.9)
A 		8.1
(3)
A 		2.8
(-1.4)
A 		4.3
(-0.2)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		7
B 3.2
(2.3)
A 		1.8
(-0.8)
A 		3.5
(3)
A 		0.8
(-3)
A 		3.4
(2.8)
A 		1.7
(-1)
A 		3
C 2
(2.5)
A 		1.2
(-1.2)
A 		0.8
(-3)
A 		2.1
(3)
A 		1.3
(-0.7)
A 		0.9
(-2.5)
A 		1
avr 2.1
(-0.8) 		3.7
(3) 		2.4
(-0.1) 		2.4
(-0.1) 		2
(-1.1) 		1.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20453
Sequence Type Exemplar sequence
Representative Public ID C59821 NCBI
Target Description C59821_rc /REP_DB=TREMBL Accession /GB=C59821 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59821
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59821 C59821_rc /REP_DB=TREMBL Accession /GB=C59821 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443c2 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037023 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:283680-283960(-) 66.79 100.0
Sequence
Target Sequence 
>C. ELEGANS:174209_AT
agttcggcaaactctgccatttcgatttatgaaggaagccagaaatccgtgttcaactta
tagtaagtttttgaaaaaactttgatccgaggctccgcccacaaaatggacgtggctatg
aaagcgccgcccattttgtgggcatggctatttctttttattttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGGCAAACTCTGCCATTTCGA 448 63 32 Antisense
AACTCTGCCATTTCGATTTATGAAG 248 141 41 Antisense
AGCCAGAAATCCGTGTTCAACTTAT 407 83 68 Antisense
AATCCGTGTTCAACTTATAGTAAGT 606 167 75 Antisense
GAAAAAACTTTGATCCGAGGCTCCG 641 353 104 Antisense
CCGCCCACAAAATGGACGTGGCTAT 262 263 126 Antisense
GGACGTGGCTATGAAAGCGCCGCCC 87 523 139 Antisense
GCTATGAAAGCGCCGCCCATTTTGT 301 301 146 Antisense
CCGCCCATTTTGTGGGCATGGCTAT 348 263 158 Antisense
GTGGGCATGGCTATTTCTTTTTATT 307 489 169 Antisense
GCATGGCTATTTCTTTTTATTTTGG 151 311 173 Antisense
Sequence Source Affymetrix Proprietary Database