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[174207_s_at]

Description C33152_rc /REP_DB=TREMBL Accession /GB=C33152 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk341f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 231.8
(3)
P 		105.9
(-3)
P 		145
(-1.1)
P 		154.4
(-0.7)
P 		126
B 186.2
(3)
P 		155.8
(0.3)
P 		117.5
(-3)
P 		171
(1.7)
P 		69
C 180.5
(-3)
P 		208.9
(3)
P 		203.8
(1.9)
P 		204.4
(2)
P 		28
avr 199.5
(3) 		156.9
(-2.8) 		155.4
(-3) 		176.6
(-0.1) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 152.8
(-2.7)
P 		165.4
(-2.3)
P 		187.5
(-1.6)
P 		142.6
(-3)
P 		290.8
(1.5)
P 		341.9
(3)
P 		199
B 191
(-2.4)
P 		242.1
(-0.9)
P 		172.8
(-3)
P 		271.3
(0)
P 		232.8
(-1.2)
P 		369.7
(3)
P 		197
C 163.6
(-3)
P 		255.2
(1.5)
P 		186.4
(-1.9)
P 		205.3
(-0.9)
P 		177.2
(-2.3)
P 		284.7
(3)
P 		121
avr 169.1
(-3) 		220.9
(-1.1) 		182.2
(-2.5) 		206.4
(-1.6) 		233.6
(-0.6) 		332.1
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 84.4
(3)
P 		23
(-3)
P 		37.9
(-1.5)
P 		22.6
(-3)
P 		62
B 59.4
(3)
P 		38.5
(-0.9)
P 		27.2
(-3)
P 		36.4
(-1.3)
P 		32
C 59.8
(1.2)
P 		60.1
(1.2)
P 		71
(3)
P 		34.5
(-3)
P 		37
avr 67.9
(3) 		40.5
(-1.5) 		45.4
(-0.7) 		31.2
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 28.2
(-3)
P 		58.8
(0.1)
P 		40.8
(-1.7)
P 		36.2
(-2.2)
P 		87.8
(3)
P 		83.2
(2.5)
P 		60
B 66.5
(-1.5)
P 		80.6
(-0.6)
P 		42
(-3)
P 		71.9
(-1.1)
P 		94.6
(0.3)
P 		137.9
(3)
P 		96
C 60.6
(-0.9)
P 		77.9
(1.1)
P 		47.4
(-2.3)
P 		41.3
(-3)
P 		57.4
(-1.2)
P 		95.3
(3)
P 		54
avr 51.8
(-2.2) 		72.4
(-0.2) 		43.4
(-3) 		49.8
(-2.4) 		79.9
(0.5) 		105.5
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174207_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21814
Sequence Type Exemplar sequence
Representative Public ID C33152 NCBI
Target Description C33152_rc /REP_DB=TREMBL Accession /GB=C33152 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk341f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074309 NCBI Caenorhabditis elegans C25D7.10 (C25D7.10) mRNA, complete cds. 11/11 None
C25D7.10 ENSEMBL cdna:known chromosome:CEL140:V:15070051:15071138:1 gene:C25D7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15070798-15071077(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25D7.10
Entrez Gene 180013 Entrez gene
SwissProt O17602 EMBL-EBI
WormBase CE27731 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02779 Hypothetical protein C25D7.10 [Caenorhabditis elegans] ref|NP_506710.1| C25D7.10 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506710.1 5 36-58,68-85,98-120,140-162,174-196
C25D7.10 5 36-58,68-85,98-120,140-162,174-196
Sequence
Target Sequence 
>C. ELEGANS:174207_S_AT
gtattttatacacttcagaattatttagttttaaccccactgaaaatgttaattcttctg
atagccacctcctcgctcaattcaattttccttcaaatccttctctcaatctttgttttc
ccttactttgaagttgtaacattatcaacaattatttcattctacattcattttaacaat
gcctttttcatgaaccatctcagctcctgtgactggccagtggcaacggtttggattttt
agtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTTATACACTTCAGAATTATT 333 453 17 Antisense
TGTTAATTCTTCTGATAGCCACCTC 413 561 63 Antisense
CCTCGCTCAATTCAATTTTCCTTCA 560 267 87 Antisense
CTTCAAATCCTTCTCTCAATCTTTG 659 221 107 Antisense
TCAATCTTTGTTTTCCCTTACTTTG 189 633 122 Antisense
ACAATTATTTCATTCTACATTCATT 328 115 164 Antisense
AACAATGCCTTTTTCATGAACCATC 336 135 191 Antisense
CTTTTTCATGAACCATCTCAGCTCC 418 223 199 Antisense
TCCTGTGACTGGCCAGTGGCAACGG 672 593 221 Antisense
ACTGGCCAGTGGCAACGGTTTGGAT 348 1 228 Antisense
TGGCAACGGTTTGGATTTTTAGTCG 98 545 237 Antisense
Sequence Source Affymetrix Proprietary Database