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[174206_at]

Description C54122_rc /REP_DB=TREMBL Accession /GB=C54122 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk349a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 675.8
(3)
P 		569.2
(-2.4)
P 		557.4
(-3)
P 		653.5
(1.9)
P 		118
B 687.5
(1.7)
P 		546.8
(-3)
P 		553.1
(-2.8)
P 		727.1
(3)
P 		180
C 654.6
(3)
P 		533.7
(-3)
P 		567.9
(-1.3)
P 		616
(1.1)
P 		121
avr 672.6
(3) 		549.9
(-3) 		559.5
(-2.5) 		665.5
(2.7) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 682.4
(0.5)
P 		642.8
(0)
P 		408.3
(-2.8)
P 		387.7
(-3)
P 		537.5
(-1.2)
P 		890.3
(3)
P 		503
B 690.5
(2.3)
P 		720.2
(3)
P 		463.6
(-2.8)
P 		453.7
(-3)
P 		488.3
(-2.2)
P 		668.8
(1.8)
P 		267
C 676
(2.4)
P 		636
(1.4)
P 		546.6
(-0.9)
P 		461.4
(-3)
P 		535.8
(-1.1)
P 		701.5
(3)
P 		240
avr 683
(1.7) 		666.3
(1.4) 		472.8
(-2.3) 		434.3
(-3) 		520.5
(-1.4) 		753.5
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 246.1
(3)
P 		123.6
(-1.9)
P 		145.7
(-1)
P 		95.7
(-3)
P 		150
B 219.2
(3)
P 		135
(-2.6)
P 		128.2
(-3)
P 		154.9
(-1.2)
P 		91
C 216.7
(3)
P 		153.4
(-0.4)
P 		197.9
(2)
P 		103.9
(-3)
P 		113
avr 227.3
(3) 		137.3
(-1.9) 		157.3
(-0.8) 		118.2
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 125.8
(-1.4)
P 		228.6
(3)
P 		88.9
(-3)
P 		98.3
(-2.6)
P 		162.2
(0.1)
P 		216.8
(2.5)
P 		140
B 240.3
(2.6)
P 		239.7
(2.6)
P 		112.6
(-3)
P 		120.2
(-2.7)
P 		198.4
(0.8)
P 		249.4
(3)
P 		137
C 250.6
(3)
P 		194.1
(0.9)
P 		139.1
(-1.2)
P 		92.8
(-3)
P 		173.4
(0.1)
P 		234.8
(2.4)
P 		158
avr 205.6
(1.7) 		220.8
(2.4) 		113.5
(-2.6) 		103.8
(-3) 		178
(0.4) 		233.7
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22348
Sequence Type Exemplar sequence
Representative Public ID C54122 NCBI
Target Description C54122_rc /REP_DB=TREMBL Accession /GB=C54122 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk349a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078122 NCBI Caenorhabditis elegans T10B10.3 (T10B10.3) mRNA, complete cds. 11/11 None
T10B10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:15177970:15181381:-1 gene:T10B10.3 11/11 None
T10B10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:15177970:15181383:-1 gene:T10B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15177979-15178407(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B10.3
Entrez Gene 181612 Entrez gene
SwissProt Q22368 EMBL-EBI
WormBase CE06401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96673 Hypothetical protein T10B10.3 [Caenorhabditis elegans] ref|NP_510523.1| T10B10.3 [Caenorhabditis elegans] 0.0
blast CAE63246 Hypothetical protein CBG07612 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:174206_AT
cttcaactctgttccttcgaacttgtctcatttaattgtagtctatcgcgggcccatttg
tgcagagcccccggtgcttctgttcgtcacggctaataactgttaatttcccagatttct
ttcaacccacctttttgttgttgttatcctgcacatttcaatgctcacaccccaaactag
attatacggaatttcatgtttttacacgtttaagttgtcattctttcccgcttctcccga
acgtttcaaagcctaactctcacatttacaattcacttattcaccctcggtatatgtata
agcttattcgagcttactttttttttctgtctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAACTCTGTTCCTTCGAACTTG 81 223 17 Antisense
GTTCCTTCGAACTTGTCTCATTTAA 617 439 27 Antisense
TTTAATTGTAGTCTATCGCGGGCCC 38 651 47 Antisense
TGCTTCTGTTCGTCACGGCTAATAA 226 579 91 Antisense
CCACCTTTTTGTTGTTGTTATCCTG 185 273 143 Antisense
TCCTGCACATTTCAATGCTCACACC 594 593 163 Antisense
TGCTCACACCCCAAACTAGATTATA 72 581 178 Antisense
GCTTCTCCCGAACGTTTCAAAGCCT 613 295 246 Antisense
TCAAAGCCTAACTCTCACATTTACA 529 629 262 Antisense
ATTCACTTATTCACCCTCGGTATAT 513 11 287 Antisense
GAGCTTACTTTTTTTTTCTGTCTGT 589 387 326 Antisense
Sequence Source Affymetrix Proprietary Database