[Home] | [Total List]

[174205_at]

Description C53567_rc /REP_DB=TREMBL Accession /GB=C53567 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 96      6grp_total > 66      4grp_total > 07      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 917.6
(2.5)
P 		663.6
(-3)
P 		938.8
(3)
P 		919.2
(2.6)
P 		275
B 762
(0.8)
P 		593.7
(-3)
P 		851.7
(2.9)
P 		856.8
(3)
P 		263
C 723.2
(2.8)
P 		608.2
(-0.1)
P 		731.6
(3)
P 		495.4
(-3)
P 		236
avr 800.9
(1.9) 		621.8
(-3) 		840.7
(3) 		757.1
(0.7) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1016
1 2 3 4 5 6 range
A 923.7
(1)
P 		723.7
(-0.7)
P 		470.3
(-3)
P 		640
(-1.5)
P 		743.9
(-0.6)
P 		1143.7
(3)
P 		673
B 488.6
(-3)
P 		587.9
(-2.2)
P 		611.8
(-2)
P 		884
(0.3)
P 		528.3
(-2.7)
P 		1200
(3)
P 		711
C 464.4
(-3)
P 		685.7
(-1.7)
P 		785.4
(-1.1)
P 		869
(-0.6)
P 		490.7
(-2.8)
P 		1480.4
(3)
P 		1016
avr 625.6
(-2.7) 		665.8
(-2.3) 		622.5
(-2.7) 		797.7
(-1.2) 		587.6
(-3) 		1274.7
(3) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 334.1
(3)
P 		144
(-2.7)
P 		245.4
(0.3)
P 		134.5
(-3)
P 		200
B 243
(3)
P 		146.6
(-3)
P 		197.4
(0.2)
P 		182.6
(-0.8)
P 		96
C 239.4
(2.5)
P 		174.9
(0.2)
P 		255
(3)
P 		83.5
(-3)
P 		172
avr 272.2
(3) 		155.2
(-2.1) 		232.6
(1.3) 		133.5
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 170.3
(-0.7)
P 		257.4
(2.3)
P 		102.4
(-3)
P 		162.3
(-1)
P 		224.5
(1.2)
P 		278.5
(3)
P 		176
B 170
(-2.6)
P 		195.7
(-2.1)
P 		148.6
(-3)
P 		234.2
(-1.3)
P 		214.6
(-1.7)
P 		447.5
(3)
P 		299
C 172.1
(-2.8)
P 		209.2
(-2.1)
P 		199.9
(-2.3)
P 		174.8
(-2.7)
P 		158.8
(-3)
P 		495.6
(3)
P 		337
avr 170.8
(-2.5) 		220.8
(-1.4) 		150.3
(-3) 		190.4
(-2.1) 		199.3
(-1.9) 		407.2
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21001
Sequence Type Exemplar sequence
Representative Public ID C53567 NCBI
Target Description C53567_rc /REP_DB=TREMBL Accession /GB=C53567 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065711 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-251) (tag-251) mRNA, complete cds. 11/11 None
C34E10.5.2 ENSEMBL cdna:known chromosome:CEL140:III:5230512:5234431:1 gene:C34E10.5 11/11 None
C34E10.5.1 ENSEMBL cdna:known chromosome:CEL140:III:5230527:5234453:1 gene:C34E10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C34E10.5.3 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5233956-5234393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-251
Ensembl C34E10.5
Entrez Gene 175717 Entrez gene
SwissProt P46580 EMBL-EBI
WormBase CE29033 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8168 methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95874 Hypothetical protein C34E10.5 [Caenorhabditis elegans] ref|NP_498112.1| Temporarily Assigned Gene name family member (tag-251) [Caenorhabditis elegans] sp|P46580|YLB5_CAEEL Hypothetical protein C34E10.5 in chromosome III 0.0
blast T15762 hypothetical protein C34E10.5 - Caenorhabditis elegans 0.0
blast CAE73663 Hypothetical protein CBG21172 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007857 EMBL-EBI Skb1 methyltransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174205_AT
gaatgtagtgcctagtttttcgcttttataattattattttcctgttttaatcctaattg
ttgatgtgttattcacttttgcgcccctattgaatttcccaatcattcctagaatttttt
ccgttggttttcccatttcctgttgcccattttccggttcattaatttgaagattctttt
ttgctccggtatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTAGTGCCTAGTTTTTCGCTT 158 315 175 Antisense
GTGCCTAGTTTTTCGCTTTTATAAT 341 477 182 Antisense
TATTTTCCTGTTTTAATCCTAATTG 197 663 210 Antisense
AATCCTAATTGTTGATGTGTTATTC 470 167 224 Antisense
TGATGTGTTATTCACTTTTGCGCCC 511 565 236 Antisense
CGCCCCTATTGAATTTCCCAATCAT 118 257 256 Antisense
GAATTTCCCAATCATTCCTAGAATT 306 325 266 Antisense
TCATTCCTAGAATTTTTTCCGTTGG 96 613 277 Antisense
TTTTCCGGTTCATTAATTTGAAGAT 629 675 324 Antisense
GAAGATTCTTTTTTGCTCCGGTATC 488 337 343 Antisense
AGATTCTTTTTTGCTCCGGTATCTA 22 67 345 Antisense
Sequence Source Affymetrix Proprietary Database