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[174204_at]

Description C59633_rc /REP_DB=TREMBL Accession /GB=C59633 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e3 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2400
1 2 3 4 range
A 122.5
(-2.6)
A 		22.1
(-3)
A 		8
(-3)
A 		1841.7
(3)
P 		1834
B 132.5
(-2.7)
A 		11.7
(-3)
A 		5.5
(-3)
A 		2405.1
(3)
P 		2400
C 193
(-2.5)
A 		21.3
(-3)
A 		8.4
(-3)
A 		2052.3
(3)
P 		2044
avr 149.3
(-2.6) 		18.4
(-3) 		7.3
(-3) 		2099.7
(3) 		2092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5113
1 2 3 4 5 6 range
A 36.5
(-3)
A 		64.2
(-2.9)
A 		11.5
(-3)
A 		53.6
(-2.9)
A 		1393.8
(-1)
P 		4151.5
(3)
P 		4140
B 37.2
(-3)
A 		108.4
(-2.9)
A 		21.5
(-3)
A 		160.3
(-2.8)
A 		1256.2
(-1.5)
P 		5085.7
(3)
P 		5064
C 14.1
(-3)
A 		20.5
(-3)
A 		17
(-3)
A 		151.7
(-2.8)
A 		1157.6
(-1.7)
P 		5124.2
(3)
P 		5110
avr 29.3
(-3) 		64.4
(-2.9) 		16.7
(-3) 		121.9
(-2.9) 		1269.2
(-1.4) 		4787.1
(3) 		4770
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 44.6
(-2)
A 		4.8
(-2.9)
A 		2.1
(-3)
A 		269.6
(3)
P 		268
B 42.2
(-2.5)
A 		2.9
(-3)
A 		1.3
(-3)
A 		512.5
(3)
P 		511
C 63.9
(-1.9)
A 		6.1
(-2.9)
A 		2.9
(-3)
A 		346.1
(3)
P 		343
avr 50.2
(-2.2) 		4.6
(-3) 		2.1
(-3) 		376.1
(3) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1894
1 2 3 4 5 6 range
A 6.7
(-3)
A 		22.8
(-2.9)
A 		2.5
(-3)
A 		13.6
(-2.9)
A 		420.6
(-0.5)
P 		1010.8
(3)
P 		1008
B 12.9
(-3)
A 		36.1
(-2.9)
A 		5.2
(-3)
A 		42.5
(-2.9)
A 		510.4
(-1.4)
P 		1896.4
(3)
P 		1891
C 5.2
(-3)
A 		6.2
(-3)
A 		4.3
(-3)
A 		30.5
(-2.9)
A 		374.6
(-1.7)
P 		1715.4
(3)
P 		1711
avr 8.3
(-3) 		21.7
(-2.9) 		4
(-3) 		28.9
(-2.9) 		435.2
(-1.3) 		1540.9
(3) 		1537
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21664
Sequence Type Exemplar sequence
Representative Public ID C59633 NCBI
Target Description C59633_rc /REP_DB=TREMBL Accession /GB=C59633 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028648(10), NM_001028649(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028648 NCBI Caenorhabditis elegans F20A1.6a (F20A1.6) mRNA, complete cds. 10/11 None
NM_001028649 NCBI Caenorhabditis elegans F20A1.6b (F20A1.6) mRNA, complete cds. 10/11 None
F20A1.6a ENSEMBL cdna:known chromosome:CEL140:V:7027225:7029676:-1 gene:F20A1.6 10/11 None
F20A1.6b ENSEMBL cdna:known chromosome:CEL140:V:7027380:7029673:-1 gene:F20A1.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7027354-7028083(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20A1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023819 F20A1.6a [Caenorhabditis elegans] gb|AAA96126.4| Hypothetical protein F20A1.6a [Caenorhabditis elegans] 1.0E-101
blast NP_001023820 F20A1.6b [Caenorhabditis elegans] gb|AAT81197.1| Hypothetical protein F20A1.6b [Caenorhabditis elegans] 3.0E-86
blast NP_001023819 F20A1.6a [Caenorhabditis elegans] gb|AAA96126.4| Hypothetical protein F20A1.6a [Caenorhabditis elegans] 1.0E-80
blast NP_001023820 F20A1.6b [Caenorhabditis elegans] gb|AAT81197.1| Hypothetical protein F20A1.6b [Caenorhabditis elegans] 2.0E-80
blast CAE72039 Hypothetical protein CBG19121 [Caenorhabditis briggsae] 3.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023819.1 1 7-24
NP_001023820.1 1 7-24
F20A1.6a 1 7-24
F20A1.6b 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:174204_AT
tgcagaatgcacaattccaggccctccagcagctcatttcatcgtcctcgtaccctagaa
ggaccgcgtcgtattcagctgtcaaacccacagagattcactaccacacccccaaaacgg
tggacggggaggtggtcgtcccccgctcactcagagattccgggaagcggcataacgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGAATGCACAATTCCAGGCCCT 89 579 81 Antisense
CATCGTCCTCGTACCCTAGAAGGAC 154 211 120 Antisense
TCCTCGTACCCTAGAAGGACCGCGT 321 417 125 Antisense
TACCCTAGAAGGACCGCGTCGTATT 214 161 131 Antisense
TAGAAGGACCGCGTCGTATTCAGCT 134 651 136 Antisense
CGTATTCAGCTGTCAAACCCACAGA 456 247 150 Antisense
GTCAAACCCACAGAGATTCACTACC 278 463 161 Antisense
CAAACCCACAGAGATTCACTACCAC 602 189 163 Antisense
CCCCGCTCACTCAGAGATTCCGGGA 633 261 221 Antisense
CTCACTCAGAGATTCCGGGAAGCGG 273 229 226 Antisense
GATTCCGGGAAGCGGCATAACGACG 278 413 236 Antisense
Sequence Source Affymetrix Proprietary Database