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[174203_s_at]

Description C55233_rc /REP_DB=TREMBL Accession /GB=C55233 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk395c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 84      6grp_total > 56      4grp_total > 46      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 677
1 2 3 4 range
A 1017.8
(3)
P 		839.3
(0.7)
P 		542.9
(-3)
P 		745.5
(-0.4)
P 		475
B 782.6
(3)
P 		693.5
(0.4)
P 		573
(-3)
P 		628.2
(-1.4)
P 		210
C 1195.8
(3)
P 		732.4
(-1.1)
P 		720.6
(-1.2)
P 		518.7
(-3)
P 		677
avr 998.7
(3) 		755.1
(-0.8) 		612.2
(-3) 		630.8
(-2.7) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 591.4
(0.4)
P 		619.2
(0.9)
P 		382.6
(-3)
P 		501.1
(-1.1)
P 		476.3
(-1.5)
P 		747.6
(3)
P 		365
B 507.1
(-0.2)
P 		595
(1.3)
P 		697.6
(3)
P 		522.7
(0.1)
P 		337.6
(-3)
P 		672.7
(2.6)
P 		360
C 779.4
(2)
P 		623.3
(-0.5)
P 		601.6
(-0.8)
P 		641.9
(-0.2)
P 		466.2
(-3)
P 		843.3
(3)
P 		377
avr 626
(0.6) 		612.5
(0.4) 		560.6
(-0.5) 		555.2
(-0.6) 		426.7
(-3) 		754.5
(3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 370.6
(3)
P 		182.2
(-1.3)
P 		141.9
(-2.2)
P 		109.1
(-3)
P 		262
B 249.6
(3)
P 		171.3
(-1)
P 		132.8
(-3)
P 		133.9
(-2.9)
P 		117
C 395.8
(3)
P 		210.6
(-0.6)
P 		251.2
(0.2)
P 		87.5
(-3)
P 		308
avr 338.7
(3) 		188
(-1) 		175.3
(-1.3) 		110.2
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 109
(-1.9)
P 		220.2
(3)
P 		83.3
(-3)
P 		127.1
(-1.1)
P 		143.7
(-0.4)
P 		182
(1.3)
P 		137
B 176.4
(-0.9)
P 		198.1
(0.2)
P 		169.4
(-1.3)
P 		138.5
(-2.9)
P 		137.2
(-3)
P 		250.9
(3)
P 		114
C 288.9
(3)
P 		190.2
(-0.7)
P 		153.1
(-2.1)
P 		129.1
(-3)
P 		150.8
(-2.2)
P 		282.3
(2.8)
P 		160
avr 191.4
(0.4) 		202.8
(1) 		135.3
(-2.8) 		131.6
(-3) 		143.9
(-2.3) 		238.4
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174203_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20992
Sequence Type Exemplar sequence
Representative Public ID C55233 NCBI
Target Description C55233_rc /REP_DB=TREMBL Accession /GB=C55233 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk395c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066776 NCBI Caenorhabditis elegans ZK632.7 (ZK632.7) mRNA, complete cds. 11/11 None
ZK632.7.2 ENSEMBL cdna:known chromosome:CEL140:III:9819186:9823014:1 gene:ZK632.7 11/11 None
ZK632.7.1 ENSEMBL cdna:known chromosome:CEL140:III:9819188:9823014:1 gene:ZK632.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9822649-9822936(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.7
Entrez Gene 176391 Entrez gene
SwissProt P34653 EMBL-EBI
WormBase CE37601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11016.1.S1_AT similar to PABP1-dependent poly A-specific ribonuclease subunit PAN3 cfa
DROSOPHILA_2:1626332_S_AT dm
DROSGENOME1:153822_AT dm
CHICKEN:GGA.16885.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGA.18898.1.S1_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGA.9959.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGAAFFX.25166.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
HU35KSUBA:RC_AA452590_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.30348.0.S1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:225563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:225563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:44657_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:87554_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239393_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239393_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239597_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239597_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239745_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239745_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:243233_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:243233_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47237_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47723_I_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47724_R_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:54365_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95C:61800_F_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95C:61801_R_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:81269_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:81563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:81810_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:81837_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:84873_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:85892_I_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBB:RC_H57725_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBB:RC_R89847_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBC:RC_N50817_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.125243.0.A1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.159983.0.A1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
MG-U74BV2:111283_AT RIKEN cDNA 2700050F09 gene mm
MOE430B:1428768_AT RIKEN cDNA 2700050F09 gene mm
MOUSE430_2:1428768_AT RIKEN cDNA 2700050F09 gene mm
MOE430B:1447895_X_AT RIKEN cDNA 2700050F09 gene mm
MOUSE430_2:1447895_X_AT RIKEN cDNA 2700050F09 gene mm
MG-U74BV2:104988_AT RIKEN cDNA 2700050F09 gene (2700050F09Rik), mRNA mm
MG-U74BV2:115512_AT RIKEN cDNA 2700050F09 gene (2700050F09Rik), mRNA mm
RG-U34B:RC_AA964361_AT similar to OTTHUMP00000042400 rn
RG-U34B:RC_AI012264_AT similar to OTTHUMP00000042400 rn
RAE230A:1373898_AT similar to OTTHUMP00000042400 rn
RAT230_2:1373898_AT similar to OTTHUMP00000042400 rn
RAE230A:1375124_AT similar to OTTHUMP00000042400 rn
RAT230_2:1375124_AT similar to OTTHUMP00000042400 rn
RG-U34B:RC_AA850623_AT Similar to OTTHUMP00000042400 rn
RG-U34C:RC_AI176973_AT Similar to OTTHUMP00000042400 rn
YEAST_2:1774594_AT Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes Sc
Protein Similarities
Method ID Description E-Value
blast CAA80184 Hypothetical protein ZK632.7 [Caenorhabditis elegans] ref|NP_499177.3| ZK632.7 [Caenorhabditis elegans] sp|P34653|YOT7_CAEEL Hypothetical protein ZK632.7 in chromosome III 0.0
blast CAE65121 Hypothetical protein CBG09986 [Caenorhabditis briggsae] 0.0
blast EAA11807 ENSANGP00000007317 [Anopheles gambiae str. PEST] ref|XP_315693.2| ENSANGP00000007317 [Anopheles gambiae str. PEST] 1.0E-95
Sequence
Target Sequence 
>C. ELEGANS:174203_S_AT
atccattcaactcgtatgtaattagcattgcgtttatttttattttcctttgaaaactcc
acactcctccgaaagatcacactggggaatccctcttctctctgataggatttgagctgt
tgacccaggttgtttcaaattattaccccaagcaatgttatctcttctctctctctctca
atcacctctcactctacacttttgtattcaattatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCATTCAACTCGTATGTAATTAG 483 39 30 Antisense
TAGCATTGCGTTTATTTTTATTTTC 703 651 52 Antisense
ACACTCCTCCGAAAGATCACACTGG 261 109 90 Antisense
ATCACACTGGGGAATCCCTCTTCTC 520 27 105 Antisense
ATCCCTCTTCTCTCTGATAGGATTT 681 37 118 Antisense
GATAGGATTTGAGCTGTTGACCCAG 440 425 133 Antisense
GAGCTGTTGACCCAGGTTGTTTCAA 172 387 143 Antisense
GTTTCAAATTATTACCCCAAGCAAT 310 449 161 Antisense
CAAGCAATGTTATCTCTTCTCTCTC 697 185 178 Antisense
ACCTCTCACTCTACACTTTTGTATT 7 89 213 Antisense
CTACACTTTTGTATTCAATTATCCC 394 227 223 Antisense
Sequence Source Affymetrix Proprietary Database